Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   LK443_RS00290 Genome accession   NZ_CP085953
Coordinates   59677..61458 (-) Length   593 a.a.
NCBI ID   WP_227931675.1    Uniprot ID   -
Organism   Granulicatella elegans strain FDAARGOS_1559     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 54677..66458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK443_RS00275 (LK443_00275) - 55366..56313 (-) 948 WP_227931672.1 ABC transporter ATP-binding protein -
  LK443_RS00280 (LK443_00280) - 56313..57314 (-) 1002 WP_227931673.1 ABC transporter ATP-binding protein -
  LK443_RS00285 (LK443_00285) oppA 57689..59473 (-) 1785 WP_227931674.1 oligopeptide ABC transporter substrate-binding protein Regulator
  LK443_RS00290 (LK443_00290) oppA 59677..61458 (-) 1782 WP_227931675.1 oligopeptide ABC transporter substrate-binding protein Regulator
  LK443_RS00295 (LK443_00295) - 61653..63413 (-) 1761 WP_227931676.1 M3 family oligoendopeptidase -
  LK443_RS00300 (LK443_00300) - 63482..64834 (-) 1353 WP_227931677.1 PFL family protein -
  LK443_RS00305 (LK443_00305) - 64843..65115 (-) 273 WP_227931678.1 ACT domain-containing protein -
  LK443_RS09420 - 65261..66130 (+) 870 WP_322563562.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66155.28 Da        Isoelectric Point: 4.7506

>NTDB_id=621603 LK443_RS00290 WP_227931675.1 59677..61458(-) (oppA) [Granulicatella elegans strain FDAARGOS_1559]
MKRKWLWLPTAAVALTMAACGSKTTTPTTTTEGADKSKFVSEITHDGEPIKGGTLNYAIVSSSPLKGVFMDELSQDVTDS
IVGDMIDAPMFEYDDNRKLVNSGLASISFDVEGKTATVKLNSQDYKWSDGEKVTIDDYIFAYEGIGHKDYTGVRYDRDYE
NIEGMDEYHNGSASTISGLEKLDDYTVKIHYKEMTPSMQLAGGAVCSFIMPKHVFSKIPVADWEQSDAVRGKSFVGLGAF
TIESMVPGESVTMVANPNYFKGRPNIDKLVMEVVSPDSIVSEMKAGKYDIAEMPRAQYDSFKDLTNVTFVSSLESAYEYI
GFKLGKWDQEQGKNVLSENPKMGDVALRQAIAYAIDPNTAGKNLYNGLQHGANSIIIPFFKDIYNKDQEGFAYNPEKAKK
LLDDAGYKDVDGDGLRENKDGSKLTINFAARKRDDANESLIQQYLLWWKEVGLDVQLYTGRTIEVNSFYEKIQTDDPEID
MFAGGWSTGYDPNPSGLFGEKAKFNLQRYTSAEGNALMEKISSTEAFDNSKNIQFYKEWQKYVHDNAFIFPTITGEKVTA
VNKRVKYFDTKLGSNNEKSSMAKLQLTANEPVK

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=621603 LK443_RS00290 WP_227931675.1 59677..61458(-) (oppA) [Granulicatella elegans strain FDAARGOS_1559]
ATGAAAAGAAAATGGCTTTGGTTACCAACTGCAGCAGTAGCATTGACGATGGCAGCATGTGGTTCGAAAACAACAACACC
AACTACAACAACAGAGGGAGCAGATAAATCAAAATTTGTTTCTGAAATTACTCACGATGGTGAACCAATTAAAGGTGGAA
CATTAAATTATGCGATTGTTTCATCATCACCATTAAAGGGCGTGTTTATGGATGAATTATCACAAGATGTTACAGATTCA
ATTGTTGGAGATATGATTGATGCACCAATGTTTGAATATGATGATAATCGTAAATTAGTGAACTCAGGATTAGCTTCTAT
TTCATTTGATGTAGAAGGTAAAACAGCAACTGTTAAATTAAATTCTCAAGACTATAAATGGTCAGATGGAGAAAAAGTAA
CAATCGATGACTACATCTTCGCTTATGAAGGAATTGGTCACAAAGACTACACAGGTGTACGTTATGATAGAGATTATGAA
AACATTGAAGGAATGGATGAATACCACAATGGTTCTGCTTCAACAATCTCTGGTTTAGAAAAATTAGATGACTACACAGT
GAAAATTCACTACAAAGAAATGACACCTTCAATGCAATTAGCAGGAGGTGCAGTATGTAGTTTTATTATGCCAAAACATG
TATTCTCTAAAATTCCTGTAGCTGATTGGGAACAAAGTGATGCCGTTCGTGGTAAATCATTCGTTGGTCTAGGAGCGTTT
ACAATTGAATCAATGGTACCAGGTGAATCTGTAACAATGGTCGCTAACCCTAACTACTTCAAAGGTCGTCCAAACATTGA
TAAACTAGTGATGGAAGTAGTTTCTCCAGATAGTATCGTATCAGAAATGAAAGCTGGTAAATACGATATTGCCGAGATGC
CAAGAGCTCAATACGATTCATTTAAAGATTTAACAAATGTTACTTTTGTAAGTTCTTTAGAATCAGCTTATGAATATATT
GGATTTAAACTTGGTAAATGGGATCAAGAACAAGGTAAGAATGTGTTAAGTGAAAATCCAAAAATGGGTGATGTAGCTTT
ACGTCAAGCAATTGCTTATGCGATTGACCCAAATACAGCAGGTAAAAACTTGTATAATGGATTACAACATGGTGCAAACT
CAATTATCATCCCATTCTTCAAAGATATTTACAACAAAGATCAAGAAGGATTTGCTTATAATCCAGAAAAAGCTAAAAAA
CTTTTAGATGATGCAGGTTATAAAGATGTAGATGGCGATGGATTACGTGAAAACAAAGATGGTTCTAAATTAACCATTAA
CTTTGCAGCTCGTAAGCGTGATGATGCGAACGAATCATTAATTCAACAATATCTATTATGGTGGAAAGAAGTTGGATTGG
ATGTTCAATTGTATACAGGACGTACAATTGAAGTAAACAGCTTCTACGAAAAAATTCAAACTGATGATCCTGAAATTGAT
ATGTTTGCTGGTGGTTGGTCAACTGGTTACGATCCAAATCCATCAGGATTATTCGGAGAAAAAGCTAAGTTCAATCTCCA
ACGTTATACAAGTGCTGAAGGAAATGCCCTTATGGAGAAAATTTCTTCTACTGAAGCATTTGATAATTCTAAGAATATTC
AATTCTATAAAGAATGGCAAAAATATGTACACGATAATGCGTTTATTTTCCCAACTATTACTGGTGAGAAAGTTACTGCT
GTTAACAAACGTGTGAAATACTTTGATACAAAACTTGGATCAAACAACGAAAAATCTTCTATGGCTAAATTGCAATTAAC
TGCAAATGAACCAGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(111-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

55.167

100

0.558