Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   LK443_RS00285 Genome accession   NZ_CP085953
Coordinates   57689..59473 (-) Length   594 a.a.
NCBI ID   WP_227931674.1    Uniprot ID   -
Organism   Granulicatella elegans strain FDAARGOS_1559     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 52689..64473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK443_RS00265 (LK443_00265) - 53474..54382 (-) 909 WP_227931670.1 ABC transporter permease -
  LK443_RS00270 (LK443_00270) opp4B 54400..55362 (-) 963 WP_227931671.1 oligopeptide ABC transporter permease -
  LK443_RS00275 (LK443_00275) - 55366..56313 (-) 948 WP_227931672.1 ABC transporter ATP-binding protein -
  LK443_RS00280 (LK443_00280) - 56313..57314 (-) 1002 WP_227931673.1 ABC transporter ATP-binding protein -
  LK443_RS00285 (LK443_00285) oppA 57689..59473 (-) 1785 WP_227931674.1 oligopeptide ABC transporter substrate-binding protein Regulator
  LK443_RS00290 (LK443_00290) oppA 59677..61458 (-) 1782 WP_227931675.1 oligopeptide ABC transporter substrate-binding protein Regulator
  LK443_RS00295 (LK443_00295) - 61653..63413 (-) 1761 WP_227931676.1 M3 family oligoendopeptidase -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 66318.32 Da        Isoelectric Point: 4.6690

>NTDB_id=621602 LK443_RS00285 WP_227931674.1 57689..59473(-) (oppA) [Granulicatella elegans strain FDAARGOS_1559]
MKKQSKAILSSLAVVAVLGACSPKNSTDGVNDSNAKDRIFAKEVTHEGTPIKGGTLKYAIVSASPFSGLFIDELASDSTD
AALTGYVDGTMFEYDANRKLVNSGLASLEFDVPGKTVKVTLNSKDYKWSDGQPVTIDDYIFAYEGIGDKDYTGVRYDANY
KNIEGMEEFHNGQASSISGLEKIDDYSVKIHYKEMTPSMKLAGGPISSYIMPKHIFSTIPVKDWEQSDYVRGTKVVGLGA
FTIESIVPGESVTYKANEYYYKGRPKLDKIVAELVSPDSIVSEMKAGKYDIASMPRAQFDTYKDLTNVTLLGSEDSAYEY
IAFQLGKWDESISKNVMNPNAKMSDPVLRQAIAYALDIDQAGKSLYNGLQRGTNSLIIPFFKDVYNKDQEGFTYNPEKAK
KMLDDAGYKDVDGDGLRENKDGSKLTINFVARTRDDANESLIQQYLLWWKEIGLDVQLVNGRTMEVNSFYDKVEANDPEI
DMFTAGWNTGFDPDPTGLYGEDAKYNYTRFVSKEQTAIFNKINSESAFDDAKNFEYYKEWQKYVHDQAFVFPTLIGNQIT
AVNKRVKYYSTDIASNNPKNAINEMELVADTPVK

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=621602 LK443_RS00285 WP_227931674.1 57689..59473(-) (oppA) [Granulicatella elegans strain FDAARGOS_1559]
ATGAAAAAACAAAGCAAGGCAATCTTATCCTCACTTGCAGTAGTTGCTGTTTTAGGAGCATGTTCTCCGAAGAACTCTAC
AGATGGGGTAAATGACTCAAACGCAAAGGATAGAATATTTGCGAAGGAAGTTACTCATGAAGGAACACCAATAAAAGGTG
GAACATTAAAATATGCCATCGTAAGTGCATCTCCTTTTAGTGGACTTTTTATTGATGAATTAGCTTCAGATTCAACAGAT
GCGGCTTTAACAGGCTATGTTGATGGAACAATGTTTGAATATGATGCAAATCGTAAACTAGTCAATTCAGGTTTAGCATC
GTTAGAATTTGATGTTCCAGGTAAGACTGTTAAAGTAACATTAAATTCTAAAGATTATAAATGGTCTGATGGGCAACCGG
TTACTATAGATGACTATATCTTTGCTTATGAAGGGATTGGAGATAAAGATTATACAGGTGTTCGTTATGATGCGAATTAT
AAAAATATCGAAGGAATGGAAGAATTTCATAATGGACAAGCATCTAGTATTTCAGGGTTAGAAAAAATTGATGATTATTC
AGTAAAAATTCATTATAAAGAAATGACTCCATCCATGAAATTAGCAGGTGGACCAATTAGTTCTTACATTATGCCTAAAC
ATATTTTTTCAACGATTCCTGTAAAAGATTGGGAACAAAGTGATTATGTTCGTGGAACAAAAGTAGTAGGCTTAGGCGCT
TTTACCATTGAATCGATTGTTCCAGGTGAATCAGTGACTTATAAAGCAAATGAGTACTATTATAAAGGAAGACCAAAATT
AGATAAGATAGTAGCAGAACTTGTTTCTCCAGATAGTATTGTTTCTGAAATGAAAGCAGGAAAATATGATATTGCTTCTA
TGCCAAGAGCTCAATTTGATACTTATAAAGATTTAACGAATGTTACTTTATTAGGTAGCGAGGATTCTGCTTATGAATAT
ATTGCATTCCAATTAGGAAAATGGGATGAATCAATTAGTAAAAATGTCATGAATCCAAATGCCAAAATGTCTGACCCAGT
TTTACGTCAAGCGATTGCTTATGCATTAGATATTGATCAAGCAGGAAAGAGTTTGTATAACGGATTGCAAAGAGGAACGA
ATTCTTTAATCATCCCTTTCTTCAAAGATGTTTATAACAAAGATCAAGAAGGATTTACGTATAATCCAGAAAAAGCTAAA
AAAATGTTAGATGATGCAGGATATAAAGATGTAGATGGTGATGGATTAAGAGAAAATAAAGATGGTTCTAAATTAACGAT
TAACTTTGTGGCTCGTACGCGTGATGATGCGAATGAATCATTAATTCAACAATATTTATTATGGTGGAAAGAAATTGGAT
TAGATGTTCAATTAGTAAACGGACGTACAATGGAAGTGAATAGTTTCTATGATAAGGTAGAAGCAAATGACCCAGAAATT
GATATGTTTACTGCAGGATGGAATACTGGTTTTGACCCAGATCCAACAGGGTTATATGGGGAAGACGCGAAGTATAACTA
TACTCGTTTTGTAAGTAAAGAACAAACAGCTATCTTCAATAAAATTAATTCTGAAAGTGCATTCGATGATGCTAAAAATT
TTGAGTATTATAAAGAATGGCAAAAATATGTTCATGATCAAGCATTTGTTTTCCCAACTTTAATTGGGAATCAAATTACC
GCTGTGAATAAACGAGTGAAATATTATAGTACGGATATCGCTTCGAATAATCCAAAAAATGCGATTAATGAAATGGAATT
AGTGGCGGATACTCCAGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(109-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

53.756

100

0.542