Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LK401_RS05280 Genome accession   NZ_CP085952
Coordinates   1025278..1025997 (+) Length   239 a.a.
NCBI ID   WP_050845846.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020278..1030997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS05260 (LK401_05260) - 1021218..1021748 (-) 531 WP_050845844.1 DsbE family thiol:disulfide interchange protein -
  LK401_RS05265 (LK401_05265) nrfE 1021748..1023655 (-) 1908 WP_050845845.1 heme lyase NrfEFG subunit NrfE -
  LK401_RS05270 (LK401_05270) suhB 1023763..1024566 (-) 804 WP_005664157.1 inositol-1-monophosphatase -
  LK401_RS05275 (LK401_05275) comN 1024766..1025278 (+) 513 WP_005651545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LK401_RS05280 (LK401_05280) comO 1025278..1025997 (+) 720 WP_050845846.1 type II secretion system protein J Machinery gene
  LK401_RS05285 (LK401_05285) comP 1025994..1026677 (+) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  LK401_RS05290 (LK401_05290) comQ 1026670..1026957 (+) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  LK401_RS05295 (LK401_05295) recC 1027003..1030368 (+) 3366 WP_050845847.1 exodeoxyribonuclease V subunit gamma -
  LK401_RS05300 (LK401_05300) nrdR 1030423..1030872 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26862.24 Da        Isoelectric Point: 9.5507

>NTDB_id=621591 LK401_RS05280 WP_050845846.1 1025278..1025997(+) (comO) [Haemophilus influenzae strain FDAARGOS_1560]
MMKVLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=621591 LK401_RS05280 WP_050845846.1 1025278..1025997(+) (comO) [Haemophilus influenzae strain FDAARGOS_1560]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCGCTGATGATTTCACTAGCATTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACAGATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACCTCCCTTGTCGTTGCTCTTTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

99.582

0.983