Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   LK401_RS05275 Genome accession   NZ_CP085952
Coordinates   1024766..1025278 (+) Length   170 a.a.
NCBI ID   WP_005651545.1    Uniprot ID   A0A0H3PJN2
Organism   Haemophilus influenzae strain FDAARGOS_1560     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019766..1030278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK401_RS05255 (LK401_05255) nrfF 1020067..1021221 (-) 1155 WP_050845843.1 heme lyase NrfEFG subunit NrfF -
  LK401_RS05260 (LK401_05260) - 1021218..1021748 (-) 531 WP_050845844.1 DsbE family thiol:disulfide interchange protein -
  LK401_RS05265 (LK401_05265) nrfE 1021748..1023655 (-) 1908 WP_050845845.1 heme lyase NrfEFG subunit NrfE -
  LK401_RS05270 (LK401_05270) suhB 1023763..1024566 (-) 804 WP_005664157.1 inositol-1-monophosphatase -
  LK401_RS05275 (LK401_05275) comN 1024766..1025278 (+) 513 WP_005651545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LK401_RS05280 (LK401_05280) comO 1025278..1025997 (+) 720 WP_050845846.1 type II secretion system protein J Machinery gene
  LK401_RS05285 (LK401_05285) comP 1025994..1026677 (+) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  LK401_RS05290 (LK401_05290) comQ 1026670..1026957 (+) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19877.15 Da        Isoelectric Point: 8.9743

>NTDB_id=621590 LK401_RS05275 WP_005651545.1 1024766..1025278(+) (comN) [Haemophilus influenzae strain FDAARGOS_1560]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=621590 LK401_RS05275 WP_005651545.1 1024766..1025278(+) (comN) [Haemophilus influenzae strain FDAARGOS_1560]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTATTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTCTACAAGCGGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PJN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988