Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HIFGL_RS01205 Genome accession   NC_022356
Coordinates   240970..241623 (-) Length   217 a.a.
NCBI ID   WP_080228090.1    Uniprot ID   -
Organism   Haemophilus influenzae KR494     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 235970..246623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIFGL_RS01205 (HifGL_000234) sxy/tfoX 240970..241623 (-) 654 WP_080228090.1 DNA transformation protein TfoX Regulator
  HIFGL_RS01210 (HifGL_000235) recA 241995..243059 (+) 1065 WP_021034531.1 recombinase RecA Machinery gene
  HIFGL_RS01215 (HifGL_000236) recX 243139..243597 (+) 459 WP_041175256.1 recombination regulator RecX -
  HIFGL_RS01220 (HifGL_000237) crcB 243594..243980 (-) 387 WP_021034533.1 fluoride efflux transporter CrcB -
  HIFGL_RS01225 (HifGL_000238) - 243980..244798 (-) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  HIFGL_RS01230 (HifGL_000239) - 245213..246217 (+) 1005 WP_021034535.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25189.64 Da        Isoelectric Point: 9.8616

>NTDB_id=62157 HIFGL_RS01205 WP_080228090.1 240970..241623(-) (sxy/tfoX) [Haemophilus influenzae KR494]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQIIEQKLEYTLRKLNRLKDLPNLTIKHERALIKVGITDVVMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=62157 HIFGL_RS01205 WP_080228090.1 240970..241623(-) (sxy/tfoX) [Haemophilus influenzae KR494]
ATGAATATAAAGGATGGGCATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAACA
GATTATTGAGCAGAAGCTAGAATATACGTTAAGAAAGTTAAATCGATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTGTGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(19-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.244

100

0.912

Multiple sequence alignment