Detailed information NTG0621489

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: LK447_RS03135
• Genome accession: NZ_CP085947
• Coordinates: 640890..642026 (+)
• Length: 378 a.a.
• NCBI ID: WP_001045858.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain FDAARGOS_1563
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 635890..647026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LK447_RS03100 (LK447_03100)	panD	636329..636682 (+)	354	WP_000142221.1	aspartate 1-decarboxylase	-
LK447_RS03105 (LK447_03105)	-	636685..636987 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
LK447_RS03110 (LK447_03110)	-	636987..637982 (+)	996	WP_000468489.1	PDZ domain-containing protein	-
LK447_RS03115 (LK447_03115)	comB6	637990..639045 (+)	1056	WP_000786680.1	type IV secretion system protein	Machinery gene
LK447_RS03120 (LK447_03120)	comB7	639061..639174 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
LK447_RS03125 (LK447_03125)	comB8	639171..639914 (+)	744	WP_000660512.1	virB8 family protein	Machinery gene
LK447_RS03130 (LK447_03130)	comB9	639914..640897 (+)	984	WP_012552342.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
LK447_RS03135 (LK447_03135)	comB10	640890..642026 (+)	1137	WP_001045858.1	DNA type IV secretion system protein ComB10	Machinery gene
LK447_RS03140 (LK447_03140)	-	642098..643516 (+)	1419	WP_000694877.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
LK447_RS03145 (LK447_03145)	gmd	643526..644671 (+)	1146	WP_000659820.1	GDP-mannose 4,6-dehydratase	-
LK447_RS03150 (LK447_03150)	-	644664..645596 (+)	933	WP_001002458.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42221.75 Da
• Isoelectric Point: 10.0015

>NTDB_id=621489 LK447_RS03135 WP_001045858.1 640890..642026(+) (comB10) [Helicobacter pylori strain FDAARGOS_1563]
MNKWLKGALIVAGGFATITTISLIYHQKPKAPLNNQPSFLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPSRVSNKTNPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=621489 LK447_RS03135 WP_001045858.1 640890..642026(+) (comB10) [Helicobacter pylori strain FDAARGOS_1563]
ATGAATAAGTGGCTTAAGGGGGCGTTGATTGTTGCAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCTTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTACTAACCCTCCCAGTAGAGTCTCAAA
CAAAACCAACCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTGCTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCCTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTAACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.444	100	0.944