Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB6   Type   Machinery gene
Locus tag   LK447_RS03115 Genome accession   NZ_CP085947
Coordinates   637990..639045 (+) Length   351 a.a.
NCBI ID   WP_000786680.1    Uniprot ID   B5Z6A5
Organism   Helicobacter pylori strain FDAARGOS_1563     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632990..644045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK447_RS03085 (LK447_03085) - 633395..633805 (+) 411 Protein_596 universal stress protein -
  LK447_RS03090 (LK447_03090) - 633839..634114 (+) 276 WP_000784906.1 ATP-dependent Clp protease adaptor ClpS -
  LK447_RS03095 (LK447_03095) - 634114..636339 (+) 2226 WP_001051489.1 ATP-dependent Clp protease ATP-binding subunit -
  LK447_RS03100 (LK447_03100) panD 636329..636682 (+) 354 WP_000142221.1 aspartate 1-decarboxylase -
  LK447_RS03105 (LK447_03105) - 636685..636987 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  LK447_RS03110 (LK447_03110) - 636987..637982 (+) 996 WP_000468489.1 PDZ domain-containing protein -
  LK447_RS03115 (LK447_03115) comB6 637990..639045 (+) 1056 WP_000786680.1 type IV secretion system protein Machinery gene
  LK447_RS03120 (LK447_03120) comB7 639061..639174 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  LK447_RS03125 (LK447_03125) comB8 639171..639914 (+) 744 WP_000660512.1 virB8 family protein Machinery gene
  LK447_RS03130 (LK447_03130) comB9 639914..640897 (+) 984 WP_012552342.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  LK447_RS03135 (LK447_03135) comB10 640890..642026 (+) 1137 WP_001045858.1 DNA type IV secretion system protein ComB10 Machinery gene
  LK447_RS03140 (LK447_03140) - 642098..643516 (+) 1419 WP_000694877.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 39778.77 Da        Isoelectric Point: 8.8165

>NTDB_id=621485 LK447_RS03115 WP_000786680.1 637990..639045(+) (comB6) [Helicobacter pylori strain FDAARGOS_1563]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALWFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNLSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=621485 LK447_RS03115 WP_000786680.1 637990..639045(+) (comB6) [Helicobacter pylori strain FDAARGOS_1563]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTTGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACCTTTCTAACCATGTGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

TrbL/VirB6 plasmid conjugal transfer protein (TrbL)

(44-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z6A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB6 Helicobacter pylori 26695

96.581

100

0.966