Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LK447_RS02265 Genome accession   NZ_CP085947
Coordinates   459035..459610 (-) Length   191 a.a.
NCBI ID   WP_001203590.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_1563     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454035..464610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK447_RS02255 (LK447_02255) - 455746..456966 (-) 1221 WP_000580080.1 restriction endonuclease subunit S -
  LK447_RS02260 (LK447_02260) - 456963..459002 (-) 2040 WP_000879230.1 class I SAM-dependent DNA methyltransferase -
  LK447_RS02265 (LK447_02265) comFC 459035..459610 (-) 576 WP_001203590.1 ComF family protein Machinery gene
  LK447_RS02270 (LK447_02270) tmk 459598..460173 (-) 576 WP_000289714.1 dTMP kinase -
  LK447_RS02275 (LK447_02275) coaD 460175..460648 (-) 474 WP_001169275.1 pantetheine-phosphate adenylyltransferase -
  LK447_RS02280 (LK447_02280) - 460648..461211 (-) 564 WP_000780121.1 UbiX family flavin prenyltransferase -
  LK447_RS02285 (LK447_02285) flgA 461221..461877 (-) 657 WP_000697650.1 flagellar basal body P-ring formation chaperone FlgA -
  LK447_RS02290 (LK447_02290) uvrD 461874..463919 (-) 2046 WP_041201388.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21234.79 Da        Isoelectric Point: 9.0979

>NTDB_id=621480 LK447_RS02265 WP_001203590.1 459035..459610(-) (comFC) [Helicobacter pylori strain FDAARGOS_1563]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRGFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=621480 LK447_RS02265 WP_001203590.1 459035..459610(-) (comFC) [Helicobacter pylori strain FDAARGOS_1563]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAGAATCCTGCAAGAACAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCTAACAACCCACGGGGTTTCACTTTCAAAGGCGATAAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACTTTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366