Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LK454_RS00220 Genome accession   NZ_CP085923
Coordinates   39690..40094 (+) Length   134 a.a.
NCBI ID   WP_000599144.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_1601     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 34690..45094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK454_RS00185 (LK454_00185) - 34863..35801 (-) 939 WP_000833915.1 tetraacyldisaccharide 4'-kinase -
  LK454_RS00190 (LK454_00190) - 35798..36580 (-) 783 WP_001168280.1 NAD+ synthase -
  LK454_RS00200 (LK454_00200) ilvC 36829..37821 (+) 993 WP_001207770.1 ketol-acid reductoisomerase -
  LK454_RS00205 (LK454_00205) minD 37845..38651 (+) 807 WP_054833651.1 septum site-determining protein MinD -
  LK454_RS00210 (LK454_00210) minE 38648..38881 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  LK454_RS00215 (LK454_00215) dprA 38893..39693 (+) 801 WP_000841136.1 DNA-processing protein DprA Machinery gene
  LK454_RS00220 (LK454_00220) dprB 39690..40094 (+) 405 WP_000599144.1 Holliday junction resolvase RuvX Machinery gene
  LK454_RS00225 (LK454_00225) - 40321..40992 (+) 672 WP_189394268.1 tetratricopeptide repeat protein -
  LK454_RS00230 (LK454_00230) - 41107..41445 (+) 339 WP_000699883.1 hypothetical protein -
  LK454_RS00235 (LK454_00235) - 41429..41989 (+) 561 WP_000038906.1 hypothetical protein -
  LK454_RS00240 (LK454_00240) - 42019..42421 (+) 403 Protein_47 glycoside hydrolase family protein -
  LK454_RS00245 (LK454_00245) - 42409..42675 (+) 267 WP_025444753.1 hypothetical protein -
  LK454_RS00250 (LK454_00250) - 42978..43359 (+) 382 Protein_49 DUF1294 domain-containing protein -
  LK454_RS00255 (LK454_00255) - 43359..44144 (+) 786 WP_000119822.1 hypothetical protein -
  LK454_RS00260 (LK454_00260) - 44134..44358 (+) 225 WP_000426626.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15157.55 Da        Isoelectric Point: 8.2735

>NTDB_id=621282 LK454_RS00220 WP_000599144.1 39690..40094(+) (dprB) [Helicobacter pylori strain FDAARGOS_1601]
MILACDVGLKRIGIAALLNGIILPLEAILRHNRNQASRDLSDLLREKSIQVLVVGKPNESYADTNERIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=621282 LK454_RS00220 WP_000599144.1 39690..40094(+) (dprB) [Helicobacter pylori strain FDAARGOS_1601]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCACTTTTAAACGGCATTATTTTACCTTTGGAAGC
GATTTTACGCCACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAGCATTCAAGTGCTAGTGG
TGGGTAAGCCTAATGAAAGCTATGCAGATACGAACGAGCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATTTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933