Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FH508_RS23805 Genome accession   NZ_CP085880
Coordinates   4793628..4794200 (-) Length   190 a.a.
NCBI ID   WP_173479143.1    Uniprot ID   -
Organism   Lysinibacillus sp. CD3-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4788628..4799200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH508_RS23780 (FH508_0023845) - 4789727..4790419 (-) 693 WP_228134212.1 ABC transporter ATP-binding protein -
  FH508_RS23785 (FH508_0023850) - 4790412..4791695 (-) 1284 WP_173479146.1 hypothetical protein -
  FH508_RS23790 (FH508_0023855) - 4791692..4792624 (-) 933 WP_173479145.1 hypothetical protein -
  FH508_RS23795 (FH508_0023860) - 4792682..4793101 (-) 420 WP_173479144.1 hypothetical protein -
  FH508_RS23800 (FH508_0023865) rpsR 4793345..4793581 (-) 237 WP_024364646.1 30S ribosomal protein S18 -
  FH508_RS23805 (FH508_0023870) ssbA 4793628..4794200 (-) 573 WP_173479143.1 single-stranded DNA-binding protein Machinery gene
  FH508_RS23810 (FH508_0023875) rpsF 4794237..4794527 (-) 291 WP_024364644.1 30S ribosomal protein S6 -
  FH508_RS23815 (FH508_0023880) - 4794707..4795279 (+) 573 WP_173479142.1 DUF3267 domain-containing protein -
  FH508_RS23820 (FH508_0023885) - 4795296..4796336 (-) 1041 WP_173479141.1 acyl-CoA dehydrogenase family protein -
  FH508_RS23825 (FH508_0023890) ychF 4796546..4797646 (-) 1101 WP_173479266.1 redox-regulated ATPase YchF -
  FH508_RS23830 (FH508_0023895) - 4798095..4798295 (-) 201 WP_173479265.1 DUF951 domain-containing protein -
  FH508_RS23835 (FH508_0023900) - 4798351..4799178 (-) 828 WP_173479140.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20626.64 Da        Isoelectric Point: 4.9533

>NTDB_id=621118 FH508_RS23805 WP_173479143.1 4793628..4794200(-) (ssbA) [Lysinibacillus sp. CD3-6]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SFEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQYGGAMPQQGSFGGGNSYQQNQPP
MNQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=621118 FH508_RS23805 WP_173479143.1 4793628..4794200(-) (ssbA) [Lysinibacillus sp. CD3-6]
ATGATAAATCGTGTCGTATTAGTTGGAAGACTAACAAAAGACCCTGAGCTGCGCTACACACCGAATGGTATTGCGTCTAC
TCGATTTACAGTAGCTGTAAATCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATTAGCTGCGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGT
AGCTTTGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAGCCTCGTAG
TGGTGGAGGTGCTCCTGCATCAAACCAATACGGTGGACAATCTTACGCAAATAGCCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTATGGTGGCGCGATGCCTCAGCAAGGTTCATTTGGCGGCGGTAATTCTTATCAGCAAAATCAACCACCA
ATGAATCAGCCGAACTATACACGAGTAGATGAAGATCCATTTGCTAACAGCAAGGGACCAATTGAAGTATCAGAAGACGA
TCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.211

100

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

48.454

100

0.495