Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HP435_RS12120 Genome accession   NZ_CP085874
Coordinates   2460007..2461731 (+) Length   574 a.a.
NCBI ID   WP_173595770.1    Uniprot ID   -
Organism   Brevibacillus sp. HD3.3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2455007..2466731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP435_RS12100 (HP435_12130) dxs 2455866..2457749 (+) 1884 WP_173599153.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HP435_RS12105 (HP435_12135) - 2457746..2458564 (+) 819 WP_122965849.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  HP435_RS12110 (HP435_12140) - 2458678..2459535 (+) 858 WP_173595769.1 NAD(+)/NADH kinase -
  HP435_RS12115 (HP435_12145) ahrC 2459541..2459990 (+) 450 WP_122965851.1 transcriptional regulator AhrC/ArgR -
  HP435_RS12120 (HP435_12150) recN 2460007..2461731 (+) 1725 WP_173595770.1 DNA repair protein RecN Machinery gene
  HP435_RS12125 (HP435_12155) spoIVB 2461896..2463230 (+) 1335 WP_063226844.1 SpoIVB peptidase -
  HP435_RS12130 (HP435_12160) spo0A 2463569..2464357 (+) 789 WP_005827306.1 sporulation transcription factor Spo0A -
  HP435_RS12135 (HP435_12165) - 2464722..2465093 (+) 372 WP_173599152.1 hypothetical protein -
  HP435_RS12145 (HP435_12175) - 2465684..2465911 (+) 228 WP_122965855.1 hypothetical protein -
  HP435_RS12150 (HP435_12180) - 2466006..2466584 (+) 579 WP_122965856.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64561.80 Da        Isoelectric Point: 4.9047

>NTDB_id=621014 HP435_RS12120 WP_173595770.1 2460007..2461731(+) (recN) [Brevibacillus sp. HD3.3A]
MLVELSIRNFAIIKSVTVSFQRGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGELRAEVEGLFELPAGHPALAVC
ASVGVQVEQDGMLVVRRDISNQGKSIIRLNGQLVTLAMLRELGPWLVTVHGQHDTHMLMQADKHINWLDAYGEVALGAAK
QEYGKLYSSYRKTRQDLERMARNERELVQRIDLLQYQLDEIESASLTPGEDEKLLQQRKKWMNIEKVYATVQDAYRSLHG
DQKGMDWLGHAMGELERGVIYEEQLAPILETVQSAYYQIEDVVHKLRQLSYHLDFEPEQLAEVERRLDQIQSLKRKYGKS
VDDILEYAATISDELDEMHHYEDRLQQVEKRLQELAADLAVEALELSVIRQECAAKLAQEIEQQLKELHMERARFAIDVR
QTPDEEGVEIEGIKRLVDANGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVSG
RAAQAIAEKLARVAQKRQVLCITHLPQVASMADAHFLIKKEMSENETKTIVTKLSEEETVTELARMLSGAEVTAKTEEHA
REMILLGRERKAVN

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=621014 HP435_RS12120 WP_173595770.1 2460007..2461731(+) (recN) [Brevibacillus sp. HD3.3A]
ATGCTAGTGGAACTCTCTATCCGAAATTTTGCCATCATTAAATCGGTTACGGTCTCGTTTCAACGCGGGTTGAACATCCT
GACAGGGGAAACCGGCGCCGGAAAATCGATCATCATCGACGCGCTCGGACTGCTGCTCGGTGGCCGTGCGTCCGCAGATT
TTGTGCGCTACGGCGAACTGCGCGCAGAGGTGGAAGGGCTGTTTGAACTGCCTGCGGGCCATCCTGCGCTTGCGGTGTGC
GCCAGCGTAGGTGTGCAAGTGGAGCAAGACGGCATGCTCGTCGTCCGCCGGGACATTTCCAACCAGGGAAAAAGCATTAT
TCGTCTGAACGGCCAACTGGTGACGCTTGCCATGCTGCGCGAGCTTGGACCTTGGCTGGTCACGGTTCACGGCCAGCACG
ACACGCACATGCTGATGCAGGCGGACAAGCATATCAACTGGCTGGATGCGTACGGCGAAGTTGCTTTGGGAGCGGCGAAG
CAGGAATACGGCAAACTGTACTCCTCCTACCGGAAAACGCGACAGGATCTCGAACGGATGGCCCGCAACGAACGCGAGCT
GGTACAGCGCATAGACCTTTTGCAATACCAGCTTGACGAAATCGAAAGCGCTTCGCTTACTCCGGGTGAGGACGAGAAGT
TGCTGCAGCAGCGCAAAAAGTGGATGAACATTGAGAAGGTTTACGCGACCGTCCAGGACGCCTACCGCTCGCTGCACGGC
GATCAGAAGGGCATGGATTGGCTCGGTCACGCCATGGGAGAGCTGGAGCGCGGCGTGATCTACGAGGAGCAGCTTGCGCC
GATTTTGGAGACGGTGCAGTCTGCGTATTACCAGATTGAGGACGTGGTGCACAAGCTGCGCCAGCTTTCGTACCATCTGG
ACTTTGAACCGGAGCAGCTGGCAGAAGTAGAGCGCAGGCTCGACCAGATTCAGTCCTTGAAGCGCAAGTACGGAAAAAGC
GTGGATGACATTTTGGAGTATGCAGCGACCATCTCCGACGAGCTGGACGAAATGCATCACTATGAGGATCGGTTGCAACA
GGTGGAAAAACGGTTGCAGGAGCTGGCGGCTGATTTGGCTGTCGAGGCGCTGGAGCTGTCCGTCATTCGTCAGGAATGCG
CCGCGAAGCTCGCGCAGGAAATCGAGCAGCAGCTGAAAGAGCTGCATATGGAACGGGCGCGTTTTGCCATCGACGTCAGA
CAAACCCCTGATGAAGAAGGCGTTGAAATCGAAGGCATCAAGCGGCTCGTGGATGCGAATGGCATGGACCAGATCGAGTT
TTTGATTTCGCCAAACCCGGGGGAACCGTTGCGGCCGTTAGCGAAAATCGCTTCTGGCGGGGAGCTGTCCCGCGTCATGC
TGGCGATCAAGACGATCCTGGCTGGAACCGATCAGGTCGAGACGCTGATTTTTGACGAGGTAGACACGGGAGTCAGCGGC
AGAGCGGCCCAGGCGATTGCGGAAAAGCTCGCCCGCGTCGCGCAAAAACGGCAAGTGCTGTGCATTACGCATTTGCCGCA
GGTAGCTTCCATGGCGGATGCCCATTTTCTGATCAAAAAGGAAATGAGCGAAAACGAGACGAAAACGATCGTGACGAAGC
TGTCGGAAGAAGAGACGGTGACAGAGCTTGCCCGCATGCTGAGCGGGGCAGAAGTAACGGCAAAAACAGAAGAGCACGCG
CGGGAAATGATTTTGCTCGGGCGGGAAAGAAAGGCTGTCAACTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.735

98.78

0.491