Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K7G92_RS10355 Genome accession   NZ_CP085873
Coordinates   2186299..2186637 (-) Length   112 a.a.
NCBI ID   WP_224045953.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_D3081     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2181299..2191637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G92_RS10330 (K7G92_002068) serA 2181942..2183174 (-) 1233 WP_160531091.1 phosphoglycerate dehydrogenase -
  K7G92_RS10335 (K7G92_002069) rpiA 2183201..2183860 (-) 660 WP_227797929.1 ribose-5-phosphate isomerase RpiA -
  K7G92_RS10340 (K7G92_002070) hemW 2184002..2185153 (-) 1152 WP_228402798.1 radical SAM family heme chaperone HemW -
  K7G92_RS10345 (K7G92_002071) - 2185154..2185477 (-) 324 WP_049214672.1 YbjQ family protein -
  K7G92_RS10350 (K7G92_002072) rdgB 2185566..2186171 (-) 606 WP_160531095.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  K7G92_RS10355 (K7G92_002073) comE1/comEA 2186299..2186637 (-) 339 WP_224045953.1 ComEA family DNA-binding protein Machinery gene
  K7G92_RS10360 (K7G92_002074) ispH 2186824..2187768 (-) 945 WP_049214670.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K7G92_RS10365 (K7G92_002075) lspA 2187778..2188287 (-) 510 WP_228402799.1 signal peptidase II -
  K7G92_RS10370 (K7G92_002076) ileS 2188394..2191204 (-) 2811 WP_228402800.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12093.85 Da        Isoelectric Point: 6.2126

>NTDB_id=620997 K7G92_RS10355 WP_224045953.1 2186299..2186637(-) (comE1/comEA) [Pasteurella canis strain HL_D3081]
MTFNSVIIAILTLSSIFTSTNLFANSTNTTNTPLIAVDHVSTESVTGIGKININNATAAELQHDLIGVGAKKAEAIIQYR
EAHGPFTKIEQLLEVQGIGNVILEKNKDRLIF

Nucleotide


Download         Length: 339 bp        

>NTDB_id=620997 K7G92_RS10355 WP_224045953.1 2186299..2186637(-) (comE1/comEA) [Pasteurella canis strain HL_D3081]
ATGACATTTAATTCAGTTATTATTGCCATTTTAACTTTAAGCTCAATTTTTACTAGCACAAATCTATTCGCTAATTCAAC
AAACACTACAAACACACCACTTATCGCAGTAGACCATGTTTCAACTGAATCTGTTACAGGCATAGGAAAAATCAATATAA
ATAATGCGACAGCTGCAGAATTACAACATGACTTAATTGGAGTTGGTGCTAAAAAAGCAGAAGCGATTATCCAGTATCGT
GAAGCACATGGTCCTTTCACAAAGATAGAGCAATTACTTGAAGTACAGGGTATTGGTAATGTTATTTTAGAAAAAAATAA
AGATCGTTTAATCTTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(49-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.509
  comEA/comE1 Glaesserella parasuis strain SC1401

45.098

91.071

0.411