Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K7G93_RS10000 Genome accession   NZ_CP085871
Coordinates   2131606..2131944 (-) Length   112 a.a.
NCBI ID   WP_224045953.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_NV12211     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126606..2136944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G93_RS09975 (K7G93_001998) serA 2127249..2128481 (-) 1233 WP_049214675.1 phosphoglycerate dehydrogenase -
  K7G93_RS09980 (K7G93_001999) rpiA 2128508..2129167 (-) 660 WP_226690346.1 ribose-5-phosphate isomerase RpiA -
  K7G93_RS09985 (K7G93_002000) hemW 2129309..2130460 (-) 1152 WP_115323501.1 radical SAM family heme chaperone HemW -
  K7G93_RS09990 (K7G93_002001) - 2130461..2130784 (-) 324 WP_049214672.1 YbjQ family protein -
  K7G93_RS09995 (K7G93_002002) rdgB 2130873..2131478 (-) 606 WP_160531095.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  K7G93_RS10000 (K7G93_002003) comE1/comEA 2131606..2131944 (-) 339 WP_224045953.1 helix-hairpin-helix domain-containing protein Machinery gene
  K7G93_RS10005 (K7G93_002004) ispH 2132130..2133074 (-) 945 WP_049214670.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K7G93_RS10010 (K7G93_002005) lspA 2133084..2133593 (-) 510 WP_226690347.1 signal peptidase II -
  K7G93_RS10015 (K7G93_002006) ileS 2133700..2136510 (-) 2811 WP_226690348.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12093.85 Da        Isoelectric Point: 6.2126

>NTDB_id=620973 K7G93_RS10000 WP_224045953.1 2131606..2131944(-) (comE1/comEA) [Pasteurella canis strain HL_NV12211]
MTFNSVIIAILTLSSIFTSTNLFANSTNTTNTPLIAVDHVSTESVTGIGKININNATAAELQHDLIGVGAKKAEAIIQYR
EAHGPFTKIEQLLEVQGIGNVILEKNKDRLIF

Nucleotide


Download         Length: 339 bp        

>NTDB_id=620973 K7G93_RS10000 WP_224045953.1 2131606..2131944(-) (comE1/comEA) [Pasteurella canis strain HL_NV12211]
ATGACATTTAATTCAGTTATTATTGCCATTTTAACTTTAAGCTCAATTTTTACTAGCACAAATCTATTCGCTAATTCAAC
AAACACTACAAACACACCACTTATCGCAGTAGATCATGTTTCAACTGAATCTGTTACAGGTATAGGAAAAATCAATATAA
ATAATGCGACAGCTGCCGAATTACAACATGACTTAATTGGAGTTGGTGCTAAAAAAGCAGAAGCGATTATCCAGTATCGT
GAAGCACATGGTCCTTTCACAAAGATAGAGCAATTACTTGAAGTACAGGGTATTGGTAATGTTATTTTAGAAAAAAATAA
AGATCGTTTAATCTTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(49-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.509
  comEA/comE1 Glaesserella parasuis strain SC1401

45.098

91.071

0.411