Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K7G93_RS06580 Genome accession   NZ_CP085871
Coordinates   1416811..1417323 (+) Length   170 a.a.
NCBI ID   WP_115323100.1    Uniprot ID   A0A379EW18
Organism   Pasteurella canis strain HL_NV12211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1411811..1422323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G93_RS06565 (K7G93_001315) rlmB 1412362..1413099 (+) 738 WP_049215279.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  K7G93_RS06570 (K7G93_001316) sodC 1413179..1413739 (-) 561 WP_226690420.1 superoxide dismutase family protein -
  K7G93_RS06575 (K7G93_001317) uvrA 1413812..1416643 (-) 2832 WP_226690419.1 excinuclease ABC subunit UvrA -
  K7G93_RS06580 (K7G93_001318) ssb 1416811..1417323 (+) 513 WP_115323100.1 single-stranded DNA-binding protein Machinery gene
  K7G93_RS06585 (K7G93_001319) - 1417719..1421738 (-) 4020 WP_226690418.1 NACHT domain-containing NTPase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19143.99 Da        Isoelectric Point: 5.0186

>NTDB_id=620964 K7G93_RS06580 WP_115323100.1 1416811..1417323(+) (ssb) [Pasteurella canis strain HL_NV12211]
MAGVNKVIIVGNLGNDPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRNDRPQAGGYAPQASAPQYNSPTSGSYGNNFSSQSNRPQQSAPQSEPPMD
MGFEEDNIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=620964 K7G93_RS06580 WP_115323100.1 1416811..1417323(+) (ssb) [Pasteurella canis strain HL_NV12211]
ATGGCTGGAGTAAATAAAGTAATCATTGTGGGCAATTTAGGAAATGATCCTGAAATTCGCACAATGCCAAATGGCGACGC
CGTAGCGAATATTAGCGTTGCAACAAGCGAAAGCTGGATTGATAAAAATACTAACGAACGCCGTGAAATCACAGAATGGC
ATCGCATCGTATTCTATCGTCGTCAAGCTGAAGTGGCTGGAGAGTATTTACGTAAAGGCTCTAAAGTGTATGTAGAAGGG
CGCTTAAGAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTACACAACAGAGATTCAAGGCGATGTACTACAAAT
GCTAGACAGCCGCAATGATCGACCACAAGCAGGTGGTTACGCACCTCAAGCCTCTGCGCCACAATACAATTCGCCGACTA
GTGGCAGCTATGGTAATAACTTTAGCTCACAATCTAACCGTCCACAACAGTCTGCACCACAAAGTGAGCCACCAATGGAC
ATGGGCTTTGAAGAAGATAATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379EW18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.033

100

0.718
  ssb Vibrio cholerae strain A1552

54.945

100

0.588
  ssb Neisseria meningitidis MC58

43.182

100

0.447
  ssb Neisseria gonorrhoeae MS11

42.614

100

0.441