Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K7G93_RS04620 Genome accession   NZ_CP085871
Coordinates   970948..973365 (-) Length   805 a.a.
NCBI ID   WP_226690624.1    Uniprot ID   -
Organism   Pasteurella canis strain HL_NV12211     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 965948..978365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G93_RS04600 (K7G93_000921) kdsB 967179..967958 (-) 780 WP_228400507.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K7G93_RS04605 (K7G93_000922) - 967960..968142 (-) 183 WP_049213986.1 Trm112 family protein -
  K7G93_RS04610 (K7G93_000923) lpxK 968169..969134 (-) 966 WP_226690625.1 tetraacyldisaccharide 4'-kinase -
  K7G93_RS04615 (K7G93_000924) msbA 969157..970905 (-) 1749 WP_223668312.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K7G93_RS04620 (K7G93_000925) rec2 970948..973365 (-) 2418 WP_226690624.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7G93_RS04625 (K7G93_000926) dksA 973661..974098 (+) 438 WP_049213982.1 RNA polymerase-binding protein DksA -
  K7G93_RS04630 (K7G93_000927) pcnB 974187..975689 (+) 1503 WP_223668314.1 polynucleotide adenylyltransferase PcnB -
  K7G93_RS04635 (K7G93_000928) folK 975710..976195 (+) 486 WP_049213980.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K7G93_RS04640 (K7G93_000929) - 976245..977330 (-) 1086 WP_191134671.1 homoserine O-acetyltransferase -
  K7G93_RS04645 (K7G93_000930) - 977482..978195 (+) 714 WP_226690623.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 92161.44 Da        Isoelectric Point: 9.8838

>NTDB_id=620960 K7G93_RS04620 WP_226690624.1 970948..973365(-) (rec2) [Pasteurella canis strain HL_NV12211]
MRLSIEQMSACILFSAVSLLWLPDFLLLTWQMTAVACLILLILLFVCYVSGKRQCTRFLILILCLLFNLGYMHAPAHQLL
SQADKVILLPKKVKIDFKIIEILHQTDYQTFIVSAQLQKGETEQRIYLQWRTKEKVQLGEVWHGELSLKPISSRLNFSGF
DKQQWYLANRITARASVKSAVKLTQHFSWRNQLLKESLKQTEGLDYQGLLIALAFGERAWLPQQIWQIYQKTNTAHLIAI
SGLHIGLAMSIGYWIVRCVQILLPLRWIIPHLPMLSGLLLAYIYGQLAGFAIPTSRACIALFVIISCRLLRVSYNAWQLL
LIVTAILLLFDPLMILSLSFWLSISAVTCLVLWYQVFPFSLLQWQGKSISISPWHKVEWIIRIFHLQIGLLWLFTPIQLL
LFNGFSLSSFYANLIALPIYSLVLVPLVLFATFTQGAFSSWPIANEIAQKVTLILQTWQDNWHFVSQTETAFIITALTVL
FIIAVRSVYDVKKVDKTRRNLYCLNKPYFGFHFTAEPTLFCSLKRSIYCIATLIVTSCLGYPIYQSFFASQWRLDMLDVG
QGLAVLITKNGRGILYDTGSAWRSGSMAQLEIVPYLQRQGISLEHVIISHDDNDHAGGAKTILQQYPKTTLTTASRQNYG
KTDRTFCLSGQKWYWQGLNIIVLSPHHIVTRAKNMDSCVLLISDGYNNVLLTGDADVASENQFVSQLDKIDVLQVGHHGS
KTSTGYALLQKTRPKIALISSGRWNQWRFPHKQVIQRLTQYQCQIYNTAETGQISLLFNKKQITIQRARTEFSPWYRRLI
GLQKK

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=620960 K7G93_RS04620 WP_226690624.1 970948..973365(-) (rec2) [Pasteurella canis strain HL_NV12211]
ATGCGATTATCTATTGAACAAATGTCAGCTTGTATTTTATTCAGCGCAGTTTCACTACTTTGGTTACCTGATTTTTTATT
GCTCACTTGGCAGATGACAGCAGTCGCTTGTCTGATATTACTTATATTATTATTTGTTTGTTATGTTAGTGGAAAAAGAC
AATGTACAAGATTTCTCATTTTGATACTTTGTCTTCTATTTAATCTAGGTTACATGCATGCTCCTGCCCATCAGTTATTA
TCTCAAGCTGATAAAGTCATTTTATTACCCAAAAAAGTAAAAATAGATTTTAAAATTATAGAGATACTTCATCAAACTGA
TTACCAAACCTTTATTGTGTCAGCGCAGTTACAAAAAGGAGAGACCGAACAACGTATTTATCTGCAATGGCGCACGAAAG
AAAAAGTTCAGTTGGGCGAAGTATGGCATGGAGAATTGTCCTTGAAACCTATTTCTTCACGGTTAAATTTTTCAGGTTTT
GATAAACAGCAATGGTATTTAGCCAACCGAATTACTGCACGAGCATCAGTAAAAAGTGCGGTTAAACTTACCCAACATTT
TTCATGGCGTAATCAATTACTTAAAGAGAGTTTAAAACAAACAGAAGGATTAGATTATCAAGGGCTCTTAATAGCGTTAG
CTTTTGGTGAGAGAGCGTGGTTACCACAACAAATATGGCAAATTTATCAAAAAACGAATACAGCACATCTTATAGCTATT
TCTGGATTACATATTGGATTAGCAATGAGTATAGGTTATTGGATAGTACGATGTGTTCAAATTTTATTACCATTACGCTG
GATTATCCCTCATTTACCGATGTTAAGCGGTTTACTATTAGCCTATATTTATGGACAGCTAGCGGGGTTTGCAATACCAA
CCTCTCGTGCTTGTATAGCACTATTTGTGATTATAAGTTGTCGACTACTACGTGTTTCTTACAACGCTTGGCAACTTTTA
TTGATCGTCACGGCTATATTGCTGTTGTTCGATCCATTAATGATTTTATCGTTGAGTTTTTGGCTATCAATAAGCGCGGT
AACGTGTTTAGTCCTCTGGTATCAGGTTTTTCCTTTTTCTTTATTACAATGGCAAGGAAAATCCATATCTATCAGCCCTT
GGCATAAAGTAGAGTGGATTATTCGTATCTTTCACCTACAAATTGGCTTACTATGGCTTTTTACACCGATCCAATTACTT
TTGTTTAATGGTTTTTCTTTAAGTAGCTTTTATGCGAATTTAATAGCGTTACCCATTTATAGTCTCGTATTAGTGCCTCT
TGTTTTGTTTGCGACTTTTACACAAGGTGCGTTCTCATCATGGCCTATCGCAAATGAGATAGCCCAAAAAGTGACGTTAA
TTTTGCAAACTTGGCAAGATAATTGGCATTTTGTTTCTCAAACAGAAACCGCATTCATTATTACTGCACTGACAGTACTT
TTTATCATAGCAGTTCGCTCTGTATACGATGTCAAAAAAGTAGATAAAACAAGGAGAAATCTATATTGTCTCAATAAACC
TTATTTTGGCTTCCATTTTACAGCTGAACCAACATTATTTTGTTCTTTAAAACGCTCAATTTATTGCATTGCAACTTTAA
TTGTGACTAGTTGTTTGGGTTATCCGATTTATCAATCTTTTTTTGCATCTCAATGGCGTTTGGATATGTTAGATGTGGGG
CAAGGATTAGCTGTCTTAATAACAAAAAATGGGCGAGGTATCTTATATGATACAGGAAGCGCATGGCGTAGTGGTAGTAT
GGCGCAGCTTGAGATTGTGCCATATTTACAACGACAAGGTATAAGTCTAGAACACGTAATTATTAGCCATGATGACAATG
ATCATGCAGGAGGAGCAAAAACAATCTTACAACAATATCCAAAGACCACACTGACGACGGCATCAAGGCAAAATTATGGC
AAAACAGACCGCACTTTTTGTCTTTCAGGGCAAAAATGGTATTGGCAAGGATTAAACATCATAGTGCTTTCACCTCATCA
TATTGTAACGCGTGCAAAGAATATGGACTCTTGTGTATTATTGATTTCTGATGGATACAATAACGTATTGTTAACGGGGG
ATGCCGATGTTGCAAGTGAAAATCAATTTGTCTCTCAACTAGATAAAATTGATGTCTTACAAGTCGGACATCATGGGAGT
AAAACCTCGACAGGCTATGCGCTATTACAAAAAACGCGGCCTAAAATCGCGCTTATTTCAAGTGGGCGTTGGAATCAGTG
GAGGTTTCCTCATAAACAAGTGATACAGCGTTTAACGCAGTATCAATGTCAAATTTACAATACGGCAGAGACAGGACAAA
TCAGTTTATTGTTTAATAAAAAACAAATTACAATTCAAAGAGCAAGAACAGAATTTTCACCTTGGTACCGTAGATTAATT
GGCTTACAAAAAAAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-483)

Metallo-beta-lactamase superfamily (Lactamase_B)

(558-741)

Domain of unknown function (DUF4131) (DUF4131)

(29-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

50.767

97.143

0.493