Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   JK088_RS13030 Genome accession   NZ_CP085857
Coordinates   2730717..2731331 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH214     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2725717..2736331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK088_RS13010 (JK088_13020) - 2726002..2726919 (-) 918 WP_017447686.1 ABC transporter ATP-binding protein -
  JK088_RS13015 (JK088_13025) - 2727172..2728842 (-) 1671 WP_017447685.1 SulP family inorganic anion transporter -
  JK088_RS13020 (JK088_13030) can 2729126..2729794 (+) 669 WP_005462578.1 carbonate dehydratase -
  JK088_RS13025 (JK088_13035) hpt 2729868..2730398 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  JK088_RS13030 (JK088_13040) opaR 2730717..2731331 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  JK088_RS13035 (JK088_13045) lpdA 2731459..2732886 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  JK088_RS13040 (JK088_13050) aceF 2733155..2735044 (-) 1890 WP_017447684.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=620852 JK088_RS13030 WP_005479697.1 2730717..2731331(+) (opaR) [Vibrio parahaemolyticus strain LH214]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=620852 JK088_RS13030 WP_005479697.1 2730717..2731331(+) (opaR) [Vibrio parahaemolyticus strain LH214]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701