Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   LJY22_RS17355 Genome accession   NZ_CP085844
Coordinates   538833..540878 (-) Length   681 a.a.
NCBI ID   WP_074190596.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 533833..545878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS17335 (LJY22_17320) - 534278..534427 (-) 150 WP_048624969.1 hypothetical protein -
  LJY22_RS17340 (LJY22_17325) - 534432..535586 (-) 1155 WP_134645615.1 EAL domain-containing protein -
  LJY22_RS17345 (LJY22_17330) ylqF 536265..537209 (+) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  LJY22_RS17350 (LJY22_17335) cqsA 537549..538730 (+) 1182 WP_257897927.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LJY22_RS17355 (LJY22_17340) cqsS 538833..540878 (-) 2046 WP_074190596.1 response regulator Regulator
  LJY22_RS17360 (LJY22_17345) - 541246..541863 (+) 618 WP_257897928.1 HAD family phosphatase -
  LJY22_RS17365 (LJY22_17350) - 541950..542498 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  LJY22_RS17370 (LJY22_17355) - 542771..543895 (+) 1125 WP_005398197.1 fatty acid desaturase -
  LJY22_RS17375 (LJY22_17360) dcuC 544246..545613 (+) 1368 WP_257897929.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78065.52 Da        Isoelectric Point: 5.3911

>NTDB_id=620833 LJY22_RS17355 WP_074190596.1 538833..540878(-) (cqsS) [Vibrio diabolicus strain NV27]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWDFVFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRKYIHIYYQVTIT
ICLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKEAEKDQYLMSGEDVTLLREVSEDAMN
IIQSGNETIDLLLTSIDENRVSRSSFQKHSAHSVVEKAIESFSYKRATDRFAISLDARSEFDFLGSDTLLKYVMYNLFKN
AFHHRTSEDFHIHVSMTSTEHSNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPPITSDIVTEIKNDLTKLKTILTVTNQDILVSKVTDISRFMGFESTILDVNQVLKKKEYEFEFDLIFIDLE
SLDARANQLDRLESLLSFTEARIVYLFEHHPTQRACKAAYEPIWVETQAWLLNTKPTIDRLLYDSSYVSTPTASVALDTS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQENVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=620833 LJY22_RS17355 WP_074190596.1 538833..540878(-) (cqsS) [Vibrio diabolicus strain NV27]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCCAACCTGACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTTTGGGATTTTGTTTTCCCACAGGCTTATGAAAACTTGCCGCTCAGACTGTTTTGTTCACTATTGT
TCTTTGGCATCATTTTTAGAAATCGCCTGTCGTCAACGTGGCGAAAATATATCCATATTTACTACCAAGTGACGATAACG
ATCTGCTTACCGTTTTTCTTTTTCTATATGTTACTGATGAATGACTGGTCCAATGTTTGGGTCATGTCCTTTATGTCCGC
GATTTTCTTGCACATTCTATTGGTTCATGTCACAAGAGTTATGTTCGCTCAAACTTTTGCCGGAATAGGTTTAGCGACGT
TCTTTGCTTGGGTGGCGAAAGGGTTTCATCTCGATTTAACAATGGACTGGACGCATGTGCCAATCTTTCTCTTTATTTAT
GTATTTGGCAATTTATTCTATTTTCGGAACCAAGTGGAGCACGAAGCGAAGGTGTCGCTGGCTAAGTCATTCGGGGCCGG
AATTGCGCATGAAATGCGTAACCCTTTAAGTGGCCTTTGCACGTCAATCGATGTTATCCAATCAGTCTTACCCAATAAAA
AAGAAGCCGAGAAAGACCAATATCTGATGAGCGGAGAGGATGTCACCCTGCTGCGCGAAGTTAGTGAGGATGCGATGAAC
ATCATCCAGTCGGGCAACGAGACGATAGATTTACTTCTGACATCGATAGACGAAAACCGTGTCTCGCGATCCAGTTTTCA
AAAGCATTCTGCTCACTCAGTGGTTGAAAAAGCGATTGAAAGCTTTAGTTATAAGCGTGCGACGGATCGCTTTGCTATAT
CCCTAGATGCGAGAAGTGAGTTTGATTTTCTTGGTAGCGATACCTTACTCAAATACGTTATGTATAACCTTTTCAAGAAC
GCCTTCCATCATCGCACATCTGAAGATTTCCACATACATGTGTCCATGACGAGCACGGAGCACTCAAACCAAATCGTTGT
AACCGATAATGGTGCTGGTATTGCTCCTGATGTCCTACGTAATATATTTCAGGACTTTTACACAACTGGTAAGTCAGGCA
GCTATGGTTTGGGTTTGCCATTTTGTAAAAAAGTGATGCGTTCTTTTGGAGGTAACATTGAATGCCAGTCTCAGCTAGGT
GAGTGGTCTCAGTTCACGTTAACTTTCCCGCCGATCACATCTGATATCGTGACTGAAATTAAAAACGATTTGACCAAACT
CAAAACCATCCTAACGGTGACTAATCAAGATATTCTTGTGTCGAAAGTGACGGACATTAGCCGTTTTATGGGTTTTGAAT
CAACGATCTTAGATGTTAATCAAGTGCTCAAAAAGAAAGAGTATGAGTTCGAATTCGACCTAATTTTTATCGACCTTGAG
AGCTTGGACGCAAGAGCAAACCAATTAGATAGATTAGAATCTCTTTTGTCCTTCACGGAAGCTCGTATCGTTTATCTTTT
TGAGCATCACCCGACACAGAGAGCATGCAAAGCGGCATATGAGCCTATTTGGGTCGAGACTCAAGCCTGGTTATTGAATA
CTAAGCCAACCATTGACCGTCTCTTGTATGATTCAAGCTATGTGTCGACACCAACGGCCTCAGTGGCTTTGGATACGTCA
AATAAGCGGACAATTATGGTTGTGGATGATAACGAATCTTTGCGAAAATTTACCGCGATGTTACTCGAAAAGCAGGGCTT
TGAAGTTATTCAGAAAGAAGACGGGCAGCAAGCACTGGATACATTAGAGCAAGAGAACGTTGACCTCATTCTTATGGATA
TCGAGATGCCCATCATGGATGGTGTAGAAGCTTCAAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCGCATACTGGGGATAGCTCACCTGTTACGCTGGACAAAATAGGCTCTTCTGGCATGTCTGACTTTATCGTGAAACC
AGCGGATAAAAATCGCTTATTCGACAAAATCGCAAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.489

100

0.498