Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LJY22_RS17350 Genome accession   NZ_CP085844
Coordinates   537549..538730 (+) Length   393 a.a.
NCBI ID   WP_257897927.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 532549..543730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS17330 (LJY22_17315) - 532910..534271 (-) 1362 WP_053808490.1 GGDEF domain-containing protein -
  LJY22_RS17335 (LJY22_17320) - 534278..534427 (-) 150 WP_048624969.1 hypothetical protein -
  LJY22_RS17340 (LJY22_17325) - 534432..535586 (-) 1155 WP_134645615.1 EAL domain-containing protein -
  LJY22_RS17345 (LJY22_17330) ylqF 536265..537209 (+) 945 WP_005395264.1 ribosome biogenesis GTPase YlqF -
  LJY22_RS17350 (LJY22_17335) cqsA 537549..538730 (+) 1182 WP_257897927.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LJY22_RS17355 (LJY22_17340) cqsS 538833..540878 (-) 2046 WP_074190596.1 response regulator Regulator
  LJY22_RS17360 (LJY22_17345) - 541246..541863 (+) 618 WP_257897928.1 HAD family phosphatase -
  LJY22_RS17365 (LJY22_17350) - 541950..542498 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43650.95 Da        Isoelectric Point: 6.2260

>NTDB_id=620832 LJY22_RS17350 WP_257897927.1 537549..538730(+) (cqsA) [Vibrio diabolicus strain NV27]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPTCNAIVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAAEVAHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=620832 LJY22_RS17350 WP_257897927.1 537549..538730(+) (cqsA) [Vibrio diabolicus strain NV27]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCAACGTGTAATGCCATTGTTATGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAATCAAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCAGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGTGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTGCGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTCCGCAAGGCGCTGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGGGCAGAAAAGCTGGCGAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGCTCTACCGTGTTACCGCAAGAGATCATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAAC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTTTAGAAGAAAGAGATGTCTTTGGCGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGCTCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.14

98.473

0.573