Detailed information NTG0620811

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LJY22_RS11735
• Genome accession: NZ_CP085843
• Coordinates: 2578681..2579550 (+)
• Length: 289 a.a.
• NCBI ID: WP_257896954.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain NV27
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2573681..2584550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJY22_RS11715 (LJY22_11705)	nadC	2574081..2574968 (+)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LJY22_RS11720 (LJY22_11710)	pilA	2575231..2575680 (+)	450	WP_065645564.1	pilin	Machinery gene
LJY22_RS11725 (LJY22_11715)	pilB	2575684..2577369 (+)	1686	WP_257896953.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LJY22_RS11730 (LJY22_11720)	pilC	2577393..2578616 (+)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
LJY22_RS11735 (LJY22_11725)	pilD	2578681..2579550 (+)	870	WP_257896954.1	A24 family peptidase	Machinery gene
LJY22_RS11740 (LJY22_11730)	coaE	2579551..2580165 (+)	615	WP_047008979.1	dephospho-CoA kinase	-
LJY22_RS11745 (LJY22_11735)	zapD	2580193..2580933 (+)	741	WP_012841416.1	cell division protein ZapD	-
LJY22_RS11750 (LJY22_11740)	yacG	2581081..2581275 (+)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
LJY22_RS11755 (LJY22_11745)	rplS	2581953..2582306 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
LJY22_RS11760 (LJY22_11750)	trmD	2582348..2583091 (-)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LJY22_RS11765 (LJY22_11755)	rimM	2583119..2583667 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
LJY22_RS11770 (LJY22_11760)	rpsP	2583696..2583944 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32495.65 Da
• Isoelectric Point: 7.0195

>NTDB_id=620811 LJY22_RS11735 WP_257896954.1 2578681..2579550(+) (pilD) [Vibrio diabolicus strain NV27]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDAMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
AFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=620811 LJY22_RS11735 WP_257896954.1 2578681..2579550(+) (pilD) [Vibrio diabolicus strain NV27]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTACTTTTAAAAGGCAAATGCCACAACTGTCAGACAACAATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATGCTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GCATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCGTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	47.826	95.502	0.457