Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LJY22_RS11685 Genome accession   NZ_CP085843
Coordinates   2565179..2565793 (+) Length   204 a.a.
NCBI ID   WP_031780576.1    Uniprot ID   A0A0T7EDM0
Organism   Vibrio diabolicus strain NV27     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2560179..2570793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS11665 (LJY22_11655) - 2560464..2561381 (-) 918 WP_005396713.1 ABC transporter ATP-binding protein -
  LJY22_RS11670 (LJY22_11660) - 2561635..2563305 (-) 1671 WP_114323662.1 SulP family inorganic anion transporter -
  LJY22_RS11675 (LJY22_11665) can 2563583..2564251 (+) 669 WP_005379996.1 carbonate dehydratase -
  LJY22_RS11680 (LJY22_11670) hpt 2564329..2564859 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  LJY22_RS11685 (LJY22_11675) opaR 2565179..2565793 (+) 615 WP_031780576.1 transcriptional regulator OpaR Regulator
  LJY22_RS11690 (LJY22_11680) lpdA 2565939..2567366 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  LJY22_RS11695 (LJY22_11685) aceF 2567634..2569532 (-) 1899 WP_257896952.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23612.89 Da        Isoelectric Point: 6.4042

>NTDB_id=620807 LJY22_RS11685 WP_031780576.1 2565179..2565793(+) (opaR) [Vibrio diabolicus strain NV27]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKSEAELKHLVSSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=620807 LJY22_RS11685 WP_031780576.1 2565179..2565793(+) (opaR) [Vibrio diabolicus strain NV27]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCCCCGATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTGTTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACCGTTT
TTAACTACTTCCCGACTCGTGAAGACTTAGTGGATGAAGTACTCAACCACGTCGTACGTCAGTTCTCGAACTTCCTATCG
GATAACATTGACTTAGACTTACACGCACGTGAAAACATCGCCAATATTACTAATGCAATGATCGAGCTTGTCAGTCAAGA
CTGTCACTGGCTAAAAGTTTGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTAGTACAAAACATGTTCATTAAAGCGATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACTTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGTGCAAAAAGTGAAGCGGAACTTAA
GCACCTTGTTAGTTCATACTTAGACATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7EDM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711