Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NW953_RS08240 Genome accession   NZ_CP102975
Coordinates   1714899..1716161 (-) Length   420 a.a.
NCBI ID   WP_258409184.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709899..1721161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS08215 (NW953_08215) - 1710097..1710765 (-) 669 WP_123097167.1 uroporphyrinogen-III synthase -
  NW953_RS08220 (NW953_08220) hemC 1710787..1711713 (-) 927 WP_001230221.1 hydroxymethylbilane synthase -
  NW953_RS08225 (NW953_08225) - 1711755..1712570 (-) 816 WP_258409182.1 cytochrome c biogenesis protein -
  NW953_RS08230 (NW953_08230) hemA 1712592..1713938 (-) 1347 WP_258409183.1 glutamyl-tRNA reductase -
  NW953_RS08235 (NW953_08235) yihA 1714155..1714745 (-) 591 WP_063639863.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  NW953_RS08240 (NW953_08240) clpX 1714899..1716161 (-) 1263 WP_258409184.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NW953_RS08245 (NW953_08245) tig 1716312..1717613 (-) 1302 WP_000127572.1 trigger factor -
  NW953_RS08250 (NW953_08250) - 1717661..1717771 (-) 111 WP_001790560.1 hypothetical protein -
  NW953_RS08255 (NW953_08255) - 1717776..1718705 (-) 930 WP_123097163.1 hypothetical protein -
  NW953_RS08260 (NW953_08260) - 1718724..1719332 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  NW953_RS08265 (NW953_08265) rplT 1719474..1719830 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  NW953_RS08270 (NW953_08270) rpmI 1719877..1720077 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  NW953_RS08275 (NW953_08275) infC 1720106..1720633 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46207.38 Da        Isoelectric Point: 4.2800

>NTDB_id=620707 NW953_RS08240 WP_258409184.1 1714899..1716161(-) (clpX) [Staphylococcus aureus strain 16CS0209]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISGKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=620707 NW953_RS08240 WP_258409184.1 1714899..1716161(-) (clpX) [Staphylococcus aureus strain 16CS0209]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
GTTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATCATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACAACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAATATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGGAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAATTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.917

95

0.636
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531