Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NW953_RS05735 Genome accession   NZ_CP102975
Coordinates   1198407..1199279 (+) Length   290 a.a.
NCBI ID   WP_258409896.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1193407..1204279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS05710 (NW953_05710) - 1193553..1194320 (+) 768 WP_258409895.1 ribonuclease HII -
  NW953_RS05715 (NW953_05715) sucC 1194429..1195595 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  NW953_RS05720 (NW953_05720) sucD 1195617..1196525 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  NW953_RS05725 (NW953_05725) - 1196811..1196963 (+) 153 Protein_1116 cell wall hydrolase -
  NW953_RS05730 (NW953_05730) fmhC 1196991..1198235 (+) 1245 WP_000672856.1 FemA/FemB family glycyltransferase FmhC -
  NW953_RS05735 (NW953_05735) dprA 1198407..1199279 (+) 873 WP_258409896.1 DNA-processing protein DprA Machinery gene
  NW953_RS05740 (NW953_05740) topA 1199453..1201528 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  NW953_RS05745 (NW953_05745) trmFO 1201684..1202991 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33562.98 Da        Isoelectric Point: 9.6129

>NTDB_id=620677 NW953_RS05735 WP_258409896.1 1198407..1199279(+) (dprA) [Staphylococcus aureus strain 16CS0209]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKIDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYRGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=620677 NW953_RS05735 WP_258409896.1 1198407..1199279(+) (dprA) [Staphylococcus aureus strain 16CS0209]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAAATTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAGAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979