Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NW953_RS02115 Genome accession   NZ_CP102975
Coordinates   461456..462052 (+) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain 16CS0209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 456456..467052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS02085 (NW953_02085) treR 457383..458111 (+) 729 WP_258409679.1 trehalose operon repressor -
  NW953_RS02095 (NW953_02095) - 458512..458613 (+) 102 WP_001791573.1 hypothetical protein -
  NW953_RS02100 (NW953_02100) - 458752..459276 (+) 525 WP_001167834.1 N-acetyltransferase -
  NW953_RS02105 (NW953_02105) dnaX 459345..461042 (+) 1698 WP_001109040.1 DNA polymerase III subunit gamma/tau -
  NW953_RS02110 (NW953_02110) - 461132..461449 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  NW953_RS02115 (NW953_02115) recR 461456..462052 (+) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  NW953_RS02120 (NW953_02120) - 462261..462336 (+) 76 Protein_418 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=620648 NW953_RS02115 WP_000559156.1 461456..462052(+) (recR) [Staphylococcus aureus strain 16CS0209]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=620648 NW953_RS02115 WP_000559156.1 461456..462052(+) (recR) [Staphylococcus aureus strain 16CS0209]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCCGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475