Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NW965_RS09980 Genome accession   NZ_CP102968
Coordinates   2058816..2059211 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain 13-G-52     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2053816..2064211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW965_RS09960 (NW965_09960) sceD 2053946..2054641 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  NW965_RS09965 (NW965_09965) ltrA 2054975..2056063 (-) 1089 Protein_1916 group II intron reverse transcriptase/maturase -
  NW965_RS09970 (NW965_09970) - 2056343..2057989 (+) 1647 WP_258412617.1 IS1182 family transposase -
  NW965_RS09975 (NW965_09975) - 2058011..2058178 (-) 168 Protein_1918 group II intron reverse transcriptase/maturase -
  NW965_RS09980 (NW965_09980) ssb 2058816..2059211 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NW965_RS09985 (NW965_09985) - 2059405..2059845 (+) 441 WP_000846746.1 YwpF-like family protein -
  NW965_RS09990 (NW965_09990) fabZ 2059904..2060344 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NW965_RS09995 (NW965_09995) murA 2060378..2061643 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NW965_RS10000 (NW965_10000) - 2061754..2061987 (-) 234 WP_000384523.1 DUF1146 family protein -
  NW965_RS10005 (NW965_10005) - 2062119..2062211 (-) 93 WP_072468702.1 hypothetical protein -
  NW965_RS10010 (NW965_10010) - 2062547..2062951 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=620277 NW965_RS09980 WP_000932694.1 2058816..2059211(-) (ssb) [Staphylococcus aureus strain 13-G-52]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=620277 NW965_RS09980 WP_000932694.1 2058816..2059211(-) (ssb) [Staphylococcus aureus strain 13-G-52]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992