Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NW965_RS05660 Genome accession   NZ_CP102968
Coordinates   1187516..1188076 (+) Length   186 a.a.
NCBI ID   WP_258416031.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 13-G-52     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1182516..1193076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW965_RS05640 (NW965_05635) ylqF 1183352..1184236 (+) 885 WP_000236712.1 ribosome biogenesis GTPase YlqF -
  NW965_RS05645 (NW965_05640) - 1184220..1184987 (+) 768 WP_000176394.1 ribonuclease HII -
  NW965_RS05650 (NW965_05645) sucC 1185096..1186262 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  NW965_RS05655 (NW965_05650) sucD 1186284..1187192 (+) 909 WP_000110251.1 succinate--CoA ligase subunit alpha -
  NW965_RS05660 (NW965_05655) dprA 1187516..1188076 (+) 561 WP_258416031.1 DNA-protecting protein DprA Machinery gene
  NW965_RS05665 (NW965_05660) istB 1188104..1188865 (-) 762 WP_001066123.1 IS21-like element helper ATPase IstB -
  NW965_RS05670 (NW965_05665) istA 1188858..1190150 (-) 1293 WP_000777472.1 IS21 family transposase -
  NW965_RS05675 (NW965_05670) - 1190245..1190595 (+) 351 Protein_1106 DNA-processing protein DprA -
  NW965_RS05680 (NW965_05675) topA 1190769..1192844 (+) 2076 WP_001557331.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 21478.14 Da        Isoelectric Point: 8.3642

>NTDB_id=620234 NW965_RS05660 WP_258416031.1 1187516..1188076(+) (dprA) [Staphylococcus aureus strain 13-G-52]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGCKCQYKNVHK

Nucleotide


Download         Length: 561 bp        

>NTDB_id=620234 NW965_RS05660 WP_258416031.1 1187516..1188076(+) (dprA) [Staphylococcus aureus strain 13-G-52]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCTGTAAATGTCAATATAAAAATGTACATAAATG
A

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

44.33

100

0.462
  dprA Staphylococcus aureus N315

44.751

97.312

0.435