Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NW965_RS00020 Genome accession   NZ_CP102968
Coordinates   3912..5024 (+) Length   370 a.a.
NCBI ID   WP_072361324.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 13-G-52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..10024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW965_RS00005 (NW965_00005) dnaA 517..1878 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  NW965_RS00010 (NW965_00010) dnaN 2156..3289 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  NW965_RS00015 (NW965_00015) yaaA 3670..3915 (+) 246 WP_078093038.1 S4 domain-containing protein YaaA -
  NW965_RS00020 (NW965_00020) recF 3912..5024 (+) 1113 WP_072361324.1 DNA replication/repair protein RecF Machinery gene
  NW965_RS00025 (NW965_00025) gyrB 5034..6968 (+) 1935 WP_258413984.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  NW965_RS00030 (NW965_00030) gyrA 7005..9668 (+) 2664 WP_000819084.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42441.51 Da        Isoelectric Point: 6.4362

>NTDB_id=620199 NW965_RS00020 WP_072361324.1 3912..5024(+) (recF) [Staphylococcus aureus strain 13-G-52]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILIDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=620199 NW965_RS00020 WP_072361324.1 3912..5024(+) (recF) [Staphylococcus aureus strain 13-G-52]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGACTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGACTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTATCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACGACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497