Detailed information NTG0619959

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NLHDIDDJ_RS19380
• Genome accession: NZ_CP085788
• Coordinates: 377940..378800 (-)
• Length: 286 a.a.
• NCBI ID: WP_267130502.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain RCH52
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 372940..383800

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLHDIDDJ_RS01755 (NLHDIDDJ_00348)	-	373831..375141 (+)	1311	WP_228413657.1	tetratricopeptide repeat protein	-
NLHDIDDJ_RS01760 (NLHDIDDJ_00349)	-	375218..375544 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
NLHDIDDJ_RS01765 (NLHDIDDJ_00350)	rlmB	375646..376395 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
NLHDIDDJ_RS01770 (NLHDIDDJ_00351)	-	376431..377345 (+)	915	WP_000075011.1	DMT family transporter	-
NLHDIDDJ_RS01775 (NLHDIDDJ_00352)	coaE	377342..377938 (-)	597	WP_228413659.1	dephospho-CoA kinase	-
NLHDIDDJ_RS19380 (NLHDIDDJ_00353)	pilD	377940..378800 (-)	861	WP_267130502.1	prepilin peptidase	Machinery gene
NLHDIDDJ_RS01790 (NLHDIDDJ_00354)	pilC	378800..380026 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
NLHDIDDJ_RS01795 (NLHDIDDJ_00355)	pilB	380056..381768 (-)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NLHDIDDJ_RS01800 (NLHDIDDJ_00356)	tpiA	382059..382853 (+)	795	WP_086266746.1	triose-phosphate isomerase	-
NLHDIDDJ_RS01805 (NLHDIDDJ_00357)	secG	382866..383195 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32116.54 Da
• Isoelectric Point: 7.1041

>NTDB_id=619959 NLHDIDDJ_RS19380 WP_267130502.1 377940..378800(-) (pilD) [Acinetobacter baumannii strain RCH52]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLINPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=619959 NLHDIDDJ_RS19380 WP_267130502.1 377940..378800(-) (pilD) [Acinetobacter baumannii strain RCH52]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTAATCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437