Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NLHDIDDJ_RS17810 Genome accession   NZ_CP085788
Coordinates   3716452..3716979 (-) Length   175 a.a.
NCBI ID   WP_228414452.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3711452..3721979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS17790 (NLHDIDDJ_03533) - 3711641..3712516 (-) 876 WP_000218804.1 hypothetical protein -
  NLHDIDDJ_RS17795 (NLHDIDDJ_03534) aroB 3712532..3713614 (-) 1083 WP_228413439.1 3-dehydroquinate synthase -
  NLHDIDDJ_RS17800 (NLHDIDDJ_03535) aroK 3713643..3714212 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NLHDIDDJ_RS17805 (NLHDIDDJ_03536) pilQ 3714224..3716389 (-) 2166 WP_228413440.1 type IV pilus secretin PilQ family protein Machinery gene
  NLHDIDDJ_RS17810 (NLHDIDDJ_03537) pilP 3716452..3716979 (-) 528 WP_228414452.1 pilus assembly protein PilP Machinery gene
  NLHDIDDJ_RS17815 (NLHDIDDJ_03538) pilO 3716990..3717730 (-) 741 WP_228413441.1 type 4a pilus biogenesis protein PilO Machinery gene
  NLHDIDDJ_RS17820 (NLHDIDDJ_03539) pilN 3717727..3718368 (-) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  NLHDIDDJ_RS17825 (NLHDIDDJ_03540) pilM 3718368..3719426 (-) 1059 WP_228413442.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19409.60 Da        Isoelectric Point: 8.9898

>NTDB_id=619954 NLHDIDDJ_RS17810 WP_228414452.1 3716452..3716979(-) (pilP) [Acinetobacter baumannii strain RCH52]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPASIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=619954 NLHDIDDJ_RS17810 WP_228414452.1 3716452..3716979(-) (pilP) [Acinetobacter baumannii strain RCH52]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCATCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709