Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NLHDIDDJ_RS17820 Genome accession   NZ_CP085788
Coordinates   3717727..3718368 (-) Length   213 a.a.
NCBI ID   WP_042051785.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3712727..3723368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS17800 (NLHDIDDJ_03535) aroK 3713643..3714212 (-) 570 WP_000643712.1 shikimate kinase AroK -
  NLHDIDDJ_RS17805 (NLHDIDDJ_03536) pilQ 3714224..3716389 (-) 2166 WP_228413440.1 type IV pilus secretin PilQ family protein Machinery gene
  NLHDIDDJ_RS17810 (NLHDIDDJ_03537) pilP 3716452..3716979 (-) 528 WP_228414452.1 pilus assembly protein PilP Machinery gene
  NLHDIDDJ_RS17815 (NLHDIDDJ_03538) pilO 3716990..3717730 (-) 741 WP_228413441.1 type 4a pilus biogenesis protein PilO Machinery gene
  NLHDIDDJ_RS17820 (NLHDIDDJ_03539) pilN 3717727..3718368 (-) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  NLHDIDDJ_RS17825 (NLHDIDDJ_03540) pilM 3718368..3719426 (-) 1059 WP_228413442.1 pilus assembly protein PilM Machinery gene
  NLHDIDDJ_RS17830 (NLHDIDDJ_03541) ponA 3719588..3722143 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  NLHDIDDJ_RS17835 (NLHDIDDJ_03542) - 3722161..3722985 (-) 825 WP_228413444.1 putative RNA methyltransferase -
  NLHDIDDJ_RS17840 (NLHDIDDJ_03543) - 3722988..3723320 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=619956 NLHDIDDJ_RS17820 WP_042051785.1 3717727..3718368(-) (pilN) [Acinetobacter baumannii strain RCH52]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSAGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=619956 NLHDIDDJ_RS17820 WP_042051785.1 3717727..3718368(-) (pilN) [Acinetobacter baumannii strain RCH52]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCGGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTGCAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.77

98.122

0.704