Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NLHDIDDJ_RS17325 Genome accession   NZ_CP085788
Coordinates   3614516..3615151 (+) Length   211 a.a.
NCBI ID   WP_228413423.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3609516..3620151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS17310 (NLHDIDDJ_03439) adeT2 3610576..3611562 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  NLHDIDDJ_RS17315 (NLHDIDDJ_03440) - 3611642..3612457 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  NLHDIDDJ_RS17320 (NLHDIDDJ_03441) recG 3612478..3614523 (+) 2046 WP_228413421.1 ATP-dependent DNA helicase RecG -
  NLHDIDDJ_RS17325 (NLHDIDDJ_03442) comF 3614516..3615151 (+) 636 WP_228413423.1 ComF family protein Machinery gene
  NLHDIDDJ_RS17330 (NLHDIDDJ_03443) - 3615154..3615555 (-) 402 WP_000849704.1 NUDIX hydrolase -
  NLHDIDDJ_RS17335 (NLHDIDDJ_03444) - 3615570..3616151 (-) 582 WP_001084309.1 TIGR00730 family Rossman fold protein -
  NLHDIDDJ_RS17340 (NLHDIDDJ_03445) - 3616309..3617322 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  NLHDIDDJ_RS17345 (NLHDIDDJ_03446) - 3617392..3617679 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  NLHDIDDJ_RS17350 (NLHDIDDJ_03447) - 3617691..3618332 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  NLHDIDDJ_RS17355 (NLHDIDDJ_03448) - 3618359..3619039 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NLHDIDDJ_RS17360 (NLHDIDDJ_03449) mlaE 3619039..3619818 (-) 780 WP_001091947.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24525.63 Da        Isoelectric Point: 9.5617

>NTDB_id=619952 NLHDIDDJ_RS17325 WP_228413423.1 3614516..3615151(+) (comF) [Acinetobacter baumannii strain RCH52]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRHYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=619952 NLHDIDDJ_RS17325 WP_228413423.1 3614516..3615151(+) (comF) [Acinetobacter baumannii strain RCH52]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCATTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(164-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

98.578

100

0.986
  comF Acinetobacter baumannii strain A118

98.578

100

0.986