Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NLHDIDDJ_RS09210 Genome accession   NZ_CP085788
Coordinates   1933919..1934299 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RCH52     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1928919..1939299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLHDIDDJ_RS09180 (NLHDIDDJ_01825) kdsB 1929822..1930583 (+) 762 WP_228414347.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NLHDIDDJ_RS09185 (NLHDIDDJ_01826) - 1930595..1931575 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  NLHDIDDJ_RS09190 (NLHDIDDJ_01827) - 1931587..1931928 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  NLHDIDDJ_RS09195 (NLHDIDDJ_01828) - 1931946..1932719 (+) 774 WP_228414349.1 TatD family hydrolase -
  NLHDIDDJ_RS09200 (NLHDIDDJ_01829) - 1932757..1933365 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  NLHDIDDJ_RS09205 (NLHDIDDJ_01830) - 1933375..1933929 (+) 555 WP_000841373.1 type II secretion system protein -
  NLHDIDDJ_RS09210 (NLHDIDDJ_01831) xcpV 1933919..1934299 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  NLHDIDDJ_RS09215 (NLHDIDDJ_01832) xcpW 1934299..1935000 (+) 702 WP_228414351.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NLHDIDDJ_RS09220 (NLHDIDDJ_01833) gspK 1935000..1935959 (+) 960 WP_228414353.1 type II secretion system minor pseudopilin GspK -
  NLHDIDDJ_RS09225 (NLHDIDDJ_01834) - 1936190..1936786 (+) 597 WP_228414355.1 6-pyruvoyl trahydropterin synthase family protein -
  NLHDIDDJ_RS09230 (NLHDIDDJ_01835) ung 1936837..1937550 (+) 714 WP_029424376.1 uracil-DNA glycosylase -
  NLHDIDDJ_RS09235 (NLHDIDDJ_01836) - 1937547..1938671 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  NLHDIDDJ_RS09240 (NLHDIDDJ_01837) tadA 1938678..1939181 (+) 504 WP_228414357.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=619943 NLHDIDDJ_RS09210 WP_000836911.1 1933919..1934299(+) (xcpV) [Acinetobacter baumannii strain RCH52]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=619943 NLHDIDDJ_RS09210 WP_000836911.1 1933919..1934299(+) (xcpV) [Acinetobacter baumannii strain RCH52]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1