Detailed information NTG0619944

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: NLHDIDDJ_RS09215
• Genome accession: NZ_CP085788
• Coordinates: 1934299..1935000 (+)
• Length: 233 a.a.
• NCBI ID: WP_228414351.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain RCH52
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1929299..1940000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLHDIDDJ_RS09180 (NLHDIDDJ_01825)	kdsB	1929822..1930583 (+)	762	WP_228414347.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NLHDIDDJ_RS09185 (NLHDIDDJ_01826)	-	1930595..1931575 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
NLHDIDDJ_RS09190 (NLHDIDDJ_01827)	-	1931587..1931928 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
NLHDIDDJ_RS09195 (NLHDIDDJ_01828)	-	1931946..1932719 (+)	774	WP_228414349.1	TatD family hydrolase	-
NLHDIDDJ_RS09200 (NLHDIDDJ_01829)	-	1932757..1933365 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
NLHDIDDJ_RS09205 (NLHDIDDJ_01830)	-	1933375..1933929 (+)	555	WP_000841373.1	type II secretion system protein	-
NLHDIDDJ_RS09210 (NLHDIDDJ_01831)	xcpV	1933919..1934299 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
NLHDIDDJ_RS09215 (NLHDIDDJ_01832)	xcpW	1934299..1935000 (+)	702	WP_228414351.1	type II secretion system minor pseudopilin GspJ	Machinery gene
NLHDIDDJ_RS09220 (NLHDIDDJ_01833)	gspK	1935000..1935959 (+)	960	WP_228414353.1	type II secretion system minor pseudopilin GspK	-
NLHDIDDJ_RS09225 (NLHDIDDJ_01834)	-	1936190..1936786 (+)	597	WP_228414355.1	6-pyruvoyl trahydropterin synthase family protein	-
NLHDIDDJ_RS09230 (NLHDIDDJ_01835)	ung	1936837..1937550 (+)	714	WP_029424376.1	uracil-DNA glycosylase	-
NLHDIDDJ_RS09235 (NLHDIDDJ_01836)	-	1937547..1938671 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
NLHDIDDJ_RS09240 (NLHDIDDJ_01837)	tadA	1938678..1939181 (+)	504	WP_228414357.1	tRNA adenosine(34) deaminase TadA	-
NLHDIDDJ_RS09245 (NLHDIDDJ_01838)	-	1939251..1939694 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26690.67 Da
• Isoelectric Point: 9.6949

>NTDB_id=619944 NLHDIDDJ_RS09215 WP_228414351.1 1934299..1935000(+) (xcpW) [Acinetobacter baumannii strain RCH52]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYKNLNTSNREQPFS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=619944 NLHDIDDJ_RS09215 WP_228414351.1 1934299..1935000(+) (xcpW) [Acinetobacter baumannii strain RCH52]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGCGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATAAAAATTTAAATACTTCGAACAGAGAGCAACCTTTCTCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCTGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987