Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LJU43_RS12480 Genome accession   NZ_CP085753
Coordinates   2575867..2577300 (-) Length   477 a.a.
NCBI ID   WP_003861864.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 57816CZ     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2570867..2582300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU43_RS12450 (LJU43_12450) elbB 2572399..2573052 (+) 654 WP_045141582.1 isoprenoid biosynthesis glyoxalase ElbB -
  LJU43_RS12455 (LJU43_12455) mtgA 2573049..2573774 (+) 726 WP_045141581.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LJU43_RS12460 (LJU43_12460) npr 2573814..2574086 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  LJU43_RS12465 (LJU43_12465) rapZ 2574083..2574937 (-) 855 WP_003861870.1 RNase adapter RapZ -
  LJU43_RS12470 (LJU43_12470) ptsN 2574983..2575474 (-) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LJU43_RS12475 (LJU43_12475) hpf 2575557..2575844 (-) 288 WP_003861866.1 ribosome hibernation promoting factor -
  LJU43_RS12480 (LJU43_12480) rpoN/rpoN1 2575867..2577300 (-) 1434 WP_003861864.1 RNA polymerase factor sigma-54 Machinery gene
  LJU43_RS12485 (LJU43_12485) lptB 2577348..2578073 (-) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  LJU43_RS12490 (LJU43_12490) lptA 2578080..2578634 (-) 555 WP_006812136.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  LJU43_RS12495 (LJU43_12495) lptC 2578603..2579178 (-) 576 WP_015571983.1 LPS export ABC transporter periplasmic protein LptC -
  LJU43_RS12500 (LJU43_12500) kdsC 2579175..2579741 (-) 567 WP_045141580.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LJU43_RS12505 (LJU43_12505) kdsD 2579756..2580742 (-) 987 WP_045141579.1 arabinose-5-phosphate isomerase KdsD -
  LJU43_RS12510 (LJU43_12510) - 2580756..2581733 (-) 978 WP_003861852.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54099.96 Da        Isoelectric Point: 4.3358

>NTDB_id=619787 LJU43_RS12480 WP_003861864.1 2575867..2577300(-) (rpoN/rpoN1) [Enterobacter hormaechei strain 57816CZ]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=619787 LJU43_RS12480 WP_003861864.1 2575867..2577300(-) (rpoN/rpoN1) [Enterobacter hormaechei strain 57816CZ]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGACACAGAAACGCTCGATTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGATGAAATTTACACCGCGGGTACCCCTTCCGGGACACGTGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACCACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTAGAGCTGACCCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTTGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTTCTGAAACGCGTTCAGCGTTTCGACCC
GATTGGCGTCGCCGCGAAAGATCTGCGCGACTGTCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATCTGGATCTGCTGGCGAATCACGACTTCCGCACCCTGATGCGCGTCACACGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGTCCGGGGCAGTCGATCCAGACCAG
CGAACCGGAATATGTCATCCCCGATGTGCTGGTGAGAAAACACAATGGCCGGTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCCCGTAACGACGCTGATAATCAATACATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATCAAGAGCCTGGAGAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAATATCTGCACAGCCCCCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCTATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48