Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   M892_RS13755 Genome accession   NC_022269
Coordinates   2966609..2967226 (-) Length   205 a.a.
NCBI ID   WP_005428669.1    Uniprot ID   A0AAQ2XXV5
Organism   Vibrio campbellii ATCC BAA-1116     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2961609..2972226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS13740 (M892_13775) aceF 2962632..2964539 (+) 1908 WP_012128872.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  M892_RS13745 (M892_13780) lpdA 2964783..2966213 (+) 1431 WP_012128871.1 dihydrolipoyl dehydrogenase -
  M892_RS13755 (M892_13795) opaR 2966609..2967226 (-) 618 WP_005428669.1 transcriptional regulator OpaR Regulator
  M892_RS13760 (M892_13800) hpt 2967548..2968078 (+) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  M892_RS13765 (M892_13805) can 2968165..2968833 (-) 669 WP_012128868.1 carbonate dehydratase -
  M892_RS13770 (M892_13810) - 2969116..2970786 (+) 1671 WP_041853279.1 SulP family inorganic anion transporter -
  M892_RS13775 (M892_13815) - 2971026..2971943 (+) 918 WP_041853462.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=61978 M892_RS13755 WP_005428669.1 2966609..2967226(-) (opaR) [Vibrio campbellii ATCC BAA-1116]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=61978 M892_RS13755 WP_005428669.1 2966609..2967226(-) (opaR) [Vibrio campbellii ATCC BAA-1116]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTATTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCCATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTATTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGCGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment