Detailed information NTG0061976

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M892_RS13695
• Genome accession: NC_022269
• Coordinates: 2952598..2953467 (-)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2947598..2958467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M892_RS13670 (M892_17445)	ltrA	2947955..2949245 (+)	1291	Protein_2641	group II intron reverse transcriptase/maturase	-
M892_RS13675 (M892_13710)	-	2949478..2950503 (+)	1026	WP_012128883.1	IS110 family transposase	-
M892_RS13680 (M892_13715)	yacG	2950958..2951158 (-)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
M892_RS13685 (M892_13720)	zapD	2951215..2951955 (-)	741	WP_012128881.1	cell division protein ZapD	-
M892_RS13690 (M892_13725)	coaE	2951983..2952597 (-)	615	WP_012128880.1	dephospho-CoA kinase	-
M892_RS13695 (M892_13730)	pilD	2952598..2953467 (-)	870	WP_012128879.1	A24 family peptidase	Machinery gene
M892_RS13700 (M892_13735)	pilC	2953540..2954763 (-)	1224	WP_012128878.1	type II secretion system F family protein	Machinery gene
M892_RS13705 (M892_13740)	pilB	2954798..2956482 (-)	1685	Protein_2648	type IV-A pilus assembly ATPase PilB	-
M892_RS13710 (M892_13745)	-	2956489..2956914 (-)	426	WP_012128876.1	pilin	-
M892_RS13720 (M892_13755)	nadC	2957179..2958066 (-)	888	WP_012128875.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=61976 M892_RS13695 WP_012128879.1 2952598..2953467(-) (pilD) [Vibrio campbellii ATCC BAA-1116]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=61976 M892_RS13695 WP_012128879.1 2952598..2953467(-) (pilD) [Vibrio campbellii ATCC BAA-1116]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGTGTACCTCGCTCGTCTTGTCAGCAATGCGGAACACCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTGCTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439