Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | M892_RS02730 | Genome accession | NC_022269 |
| Coordinates | 605183..606604 (+) | Length | 473 a.a. |
| NCBI ID | WP_005528196.1 | Uniprot ID | A7MVI1 |
| Organism | Vibrio campbellii ATCC BAA-1116 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 600183..611604
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M892_RS02710 (M892_02685) | - | 600574..601186 (-) | 613 | Protein_537 | flavin reductase family protein | - |
| M892_RS02715 (M892_02690) | - | 601851..602546 (+) | 696 | WP_012127846.1 | NAD(P)H-binding protein | - |
| M892_RS02720 (M892_02695) | - | 602740..604113 (+) | 1374 | WP_005528200.1 | L-cystine transporter | - |
| M892_RS02725 (M892_02700) | - | 604341..605021 (+) | 681 | WP_005528198.1 | DUF1826 domain-containing protein | - |
| M892_RS02730 (M892_02705) | sbcB | 605183..606604 (+) | 1422 | WP_005528196.1 | exodeoxyribonuclease I | Machinery gene |
| M892_RS02735 (M892_02710) | - | 606663..607037 (+) | 375 | WP_012127845.1 | CidA/LrgA family protein | - |
| M892_RS02740 (M892_02715) | - | 607039..607716 (+) | 678 | WP_009705896.1 | LrgB family protein | - |
| M892_RS02745 (M892_02720) | cdd | 607981..608868 (+) | 888 | WP_012127844.1 | cytidine deaminase | - |
| M892_RS02750 (M892_02725) | purT | 609016..610191 (+) | 1176 | WP_012127843.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| M892_RS02755 (M892_02730) | - | 610278..610928 (-) | 651 | WP_005533410.1 | thiopurine S-methyltransferase | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54483.76 Da Isoelectric Point: 4.9244
>NTDB_id=61945 M892_RS02730 WP_005528196.1 605183..606604(+) (sbcB) [Vibrio campbellii ATCC BAA-1116]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=61945 M892_RS02730 WP_005528196.1 605183..606604(+) (sbcB) [Vibrio campbellii ATCC BAA-1116]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGCTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGTATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGCTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.07 |
100 |
0.791 |