Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LIT36_RS08055 Genome accession   NZ_CP085706
Coordinates   1589180..1590079 (+) Length   299 a.a.
NCBI ID   WP_014305001.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1584180..1595079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS08035 (LIT36_08045) - 1584871..1586574 (+) 1704 WP_252206777.1 glycosyl transferase -
  LIT36_RS08040 (LIT36_08050) - 1586571..1586852 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  LIT36_RS08045 (LIT36_08055) sucC 1587027..1588184 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  LIT36_RS08050 (LIT36_08060) sucD 1588213..1589115 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  LIT36_RS08055 (LIT36_08065) dprA 1589180..1590079 (+) 900 WP_014305001.1 DNA-processing protein DprA Machinery gene
  LIT36_RS08060 (LIT36_08070) topA 1590261..1592336 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  LIT36_RS08065 (LIT36_08075) trmFO 1592401..1593708 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LIT36_RS08070 (LIT36_08080) xerC 1593778..1594695 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32920.05 Da        Isoelectric Point: 8.1570

>NTDB_id=619417 LIT36_RS08055 WP_014305001.1 1589180..1590079(+) (dprA) [Bacillus velezensis strain CK17]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAARHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=619417 LIT36_RS08055 WP_014305001.1 1589180..1590079(+) (dprA) [Bacillus velezensis strain CK17]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
ACCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTAGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGTTTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365
  dprA Legionella pneumophila strain ERS1305867

43.548

82.943

0.361