Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LCH97_RS03635 Genome accession   NZ_CP085530
Coordinates   795395..796186 (+) Length   263 a.a.
NCBI ID   WP_227303450.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 790395..801186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS03615 (LCH97_03615) - 790557..790958 (-) 402 WP_227303447.1 hypothetical protein -
  LCH97_RS03620 (LCH97_03620) pgeF 790984..791733 (-) 750 WP_227303448.1 peptidoglycan editing factor PgeF -
  LCH97_RS03625 (LCH97_03625) rluD 791738..792868 (-) 1131 WP_017509602.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LCH97_RS03630 (LCH97_03630) - 793049..795244 (+) 2196 WP_227303449.1 PhoX family phosphatase -
  LCH97_RS03635 (LCH97_03635) comL 795395..796186 (+) 792 WP_227303450.1 outer membrane protein assembly factor BamD Machinery gene
  LCH97_RS03640 (LCH97_03640) - 796344..796682 (-) 339 WP_017509599.1 P-II family nitrogen regulator -
  LCH97_RS03645 (LCH97_03645) purL 796833..800714 (+) 3882 WP_227303451.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30094.93 Da        Isoelectric Point: 6.9192

>NTDB_id=618852 LCH97_RS03635 WP_227303450.1 795395..796186(+) (comL) [Vogesella sp. XCS3]
MKKSFVALLAVVLMAGCASVEPQDETRGWTVDQIYAEARDELNGGNYTRALKLYETLQARFPYGRHAQQALMDQAYTHYK
DSEPELAIAAANRFLRLYPAHASADYMYYLKGLVHFNDDTSFLARATGQDISERDPKAARESFNDFRELIARYPQSRYAE
DATLKMQHLAAALGGHEMHVARYYMKREAWLAAVNRAQSVVQEYANTGHNEEALAIMEQAYGKLGMTALQADTRRILALN
FPQSAYLTQPWEYRGQPWWKFWG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=618852 LCH97_RS03635 WP_227303450.1 795395..796186(+) (comL) [Vogesella sp. XCS3]
ATGAAAAAAAGCTTTGTAGCCTTGCTGGCCGTCGTATTGATGGCAGGTTGTGCCTCGGTGGAGCCGCAGGACGAAACCCG
TGGCTGGACGGTAGACCAGATCTACGCCGAAGCCCGTGACGAACTGAACGGTGGTAACTACACCCGCGCCCTCAAGCTTT
ATGAAACCTTGCAGGCACGCTTCCCTTATGGCCGCCACGCGCAGCAAGCGCTGATGGATCAGGCTTATACGCACTACAAG
GATAGCGAGCCGGAGCTGGCCATTGCTGCGGCCAACCGTTTCCTGCGCCTGTACCCGGCGCACGCCAGTGCCGACTATAT
GTACTACCTCAAAGGCCTGGTGCACTTCAACGATGACACCAGTTTCCTGGCGCGCGCCACCGGCCAGGACATCAGCGAGC
GTGACCCGAAGGCCGCACGCGAGTCGTTTAACGACTTCCGCGAGCTGATTGCCCGCTACCCGCAAAGCCGTTACGCCGAA
GACGCCACGCTGAAAATGCAGCATCTGGCGGCAGCGCTGGGTGGGCACGAGATGCACGTGGCCCGCTACTACATGAAGCG
CGAAGCCTGGCTGGCTGCCGTCAACCGTGCGCAGTCCGTGGTGCAGGAATACGCCAATACCGGCCATAACGAAGAGGCGC
TGGCCATCATGGAGCAGGCCTACGGCAAGCTGGGCATGACTGCCTTGCAAGCCGATACCCGCCGCATTCTGGCGCTGAAC
TTCCCGCAAAGCGCCTACCTGACGCAGCCGTGGGAATACCGCGGCCAACCTTGGTGGAAGTTCTGGGGCTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

52.632

100

0.532
  comL Neisseria gonorrhoeae MS11

51.504

100

0.521