Detailed information NTG0061878

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SIR_RS14290
• Genome accession: NC_022246
• Coordinates: 912877..914109 (-)
• Length: 410 a.a.
• NCBI ID: WP_021002792.1
• Uniprot ID: A0AAE8G325
• Organism: Streptococcus intermedius B196
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 907877..919109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIR_RS14270 (SIR_0889)	-	908522..910258 (-)	1737	WP_021002791.1	ABC transporter ATP-binding protein	-
SIR_RS14275 (SIR_0890)	-	910475..911272 (-)	798	WP_003077927.1	formate/nitrite transporter family protein	-
SIR_RS14280 (SIR_0891)	-	911447..912154 (-)	708	WP_003077899.1	glucosaminidase domain-containing protein	-
SIR_RS14285 (SIR_0892)	yihA	912277..912864 (-)	588	WP_003068868.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SIR_RS14290 (SIR_0893)	clpX	912877..914109 (-)	1233	WP_021002792.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
SIR_RS20030 (SIR_0894)	-	914163..914336 (-)	174	WP_003024903.1	hypothetical protein	-
SIR_RS14300 (SIR_0895)	-	914336..914848 (-)	513	WP_020998712.1	dihydrofolate reductase	-
SIR_RS14305 (SIR_0896)	-	915134..915973 (-)	840	WP_003072923.1	thymidylate synthase	-
SIR_RS14310 (SIR_0897)	-	916059..917276 (-)	1218	WP_021002793.1	chloride channel protein	-
SIR_RS14315 (SIR_0898)	-	917292..917555 (-)	264	WP_021002794.1	chorismate mutase	-
SIR_RS14320 (SIR_0899)	-	917594..918436 (-)	843	WP_021002795.1	hypothetical protein	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45661.18 Da
• Isoelectric Point: 4.4199

>NTDB_id=61878 SIR_RS14290 WP_021002792.1 912877..914109(-) (clpX) [Streptococcus intermedius B196]
MPTNRTSEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIAENSSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVEDLVR
ILREPKNALVKQYQTLLSYDDVTLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDIMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=61878 SIR_RS14290 WP_021002792.1 912877..914109(-) (clpX) [Streptococcus intermedius B196]
ATGCCTACAAATCGTACGAGCGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGTCAAGAAGAAGTTCAAAAAATTAT
TGCAGGAAATAATGCATTTATTTGTAACGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TCTTGGCAGACTTGTCGGAAGTACCAAAACCACAAGAATTGCTTAACATTTTAAATCACTATGTAATAGGGCAAGATCGT
GCAAAGCGAGCGCTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATTCTTATGATTGGTCCAACCGGTTCTGGTAAGACTTTTCTTGCTCAAACTTTAGCGA
AAAGTCTAAATGTTCCCTTTGCGATTGCAGATGCAACGGCTTTGACAGAAGCTGGATATGTCGGAGAAGATGTTGAAAAC
ATTCTCTTAAAACTCTTGCAAGCTGCAGATTTTAATATTGAGCGTGCAGAACGTGGCATTATCTATGTAGATGAGATTGA
CAAAATTGCAAAGAAAAGCGAAAATGTCTCTATTACTCGTGATGTGTCTGGTGAAGGCGTTCAGCAAGCTTTGCTTAAAA
TCATTGAAGGGACTGTAGCTAGTGTACCTCCTCAAGGCGGTCGCAAACATCCACAGCAAGAAATGATTCAAGTTGATACT
AAGAATATTCTTTTTATCGTTGGCGGTGCTTTTGACGGAATTGAAGAAATTGTCAAACAACGTCTAGGTGAAAAGATTAT
TGGTTTTGGTCAAAATAACAAAGCTATTGCTGAAAATAGTTCTTATATGCAAGAAATTATTTCCGAAGATATTCAAAAAT
TTGGACTTATCCCTGAATTGATTGGTCGTTTACCAGTGTTTGCTGCGCTTGAGCCTTTGACAGTTGAGGATTTGGTACGA
ATTCTTCGTGAGCCAAAGAACGCCCTAGTAAAACAATATCAAACTCTCCTTTCTTATGATGATGTTACATTAGAGTTTGA
TGATGATGCCCTCCAAGAAATTGCCAATAAGGCCATTGAACGTAAGACAGGTGCTCGTGGATTGCGTTCAATTATCGAAG
AAACTATGATGGATATCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAATTAGTGCGGATTACCAAGGAAGCAGTTGAT
GGAACAGATAAACCGATTTTAGAAACAGCTTAA

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.098	100	0.861
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.706	98.049	0.576