Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   HQN47_RS17570 Genome accession   NZ_CP085504
Coordinates   3565346..3565465 (+) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain BP1.2A     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3560346..3570465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN47_RS17550 (HQN47_017550) - 3560697..3561208 (+) 512 Protein_3401 bacteriocin biosynthesis protein AlbG -
  HQN47_RS17555 (HQN47_017555) - 3561215..3562591 (-) 1377 WP_012118684.1 YncE family protein -
  HQN47_RS17560 (HQN47_017560) - 3562631..3563986 (-) 1356 WP_012118685.1 YncE family protein -
  HQN47_RS17565 (HQN47_017565) rapF 3564217..3565362 (+) 1146 WP_012118686.1 tetratricopeptide repeat protein Regulator
  HQN47_RS17570 (HQN47_017570) phrF 3565346..3565465 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HQN47_RS17575 (HQN47_017575) - 3565663..3565866 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  HQN47_RS17580 (HQN47_017580) - 3565880..3566083 (+) 204 WP_007407641.1 hypothetical protein -
  HQN47_RS17585 (HQN47_017585) - 3566118..3566303 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  HQN47_RS17590 (HQN47_017590) - 3566489..3566770 (+) 282 WP_007407643.1 hypothetical protein -
  HQN47_RS17595 (HQN47_017595) - 3566814..3567326 (+) 513 WP_023357177.1 stage II sporulation protein M -
  HQN47_RS17600 (HQN47_017600) - 3567917..3568135 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  HQN47_RS17605 (HQN47_017605) speB 3568303..3569175 (-) 873 WP_007614448.1 agmatinase -
  HQN47_RS17610 (HQN47_017610) speE 3569234..3570064 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=618575 HQN47_RS17570 WP_007407639.1 3565346..3565465(+) (phrF) [Bacillus velezensis strain BP1.2A]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=618575 HQN47_RS17570 WP_007407639.1 3565346..3565465(+) (phrF) [Bacillus velezensis strain BP1.2A]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462