Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FHP23_RS21355 Genome accession   NZ_CP085498
Coordinates   4149488..4150531 (-) Length   347 a.a.
NCBI ID   WP_098204813.1    Uniprot ID   -
Organism   Bacillus cereus strain A22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4144488..4155531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP23_RS21310 (FHP23_021310) - 4144919..4145119 (-) 201 WP_000106083.1 YqzE family protein -
  FHP23_RS21315 (FHP23_021315) - 4145158..4145655 (-) 498 WP_000836650.1 shikimate kinase -
  FHP23_RS21320 (FHP23_021320) - 4145771..4146421 (-) 651 WP_000183860.1 2OG-Fe(II) oxygenase -
  FHP23_RS21325 (FHP23_021325) comGG 4146598..4146969 (-) 372 WP_001231273.1 competence type IV pilus minor pilin ComGG -
  FHP23_RS21330 (FHP23_021330) comGF 4146966..4147436 (-) 471 WP_000923099.1 competence type IV pilus minor pilin ComGF -
  FHP23_RS21335 (FHP23_021335) - 4147406..4147708 (-) 303 WP_000829473.1 hypothetical protein -
  FHP23_RS21340 (FHP23_021340) comGD 4147701..4148156 (-) 456 WP_000813142.1 competence type IV pilus minor pilin ComGD -
  FHP23_RS21345 (FHP23_021345) comGC 4148153..4148452 (-) 300 WP_001178686.1 competence type IV pilus major pilin ComGC -
  FHP23_RS21350 (FHP23_021350) comGB 4148464..4149495 (-) 1032 WP_000475184.1 competence type IV pilus assembly protein ComGB -
  FHP23_RS21355 (FHP23_021355) comGA 4149488..4150531 (-) 1044 WP_098204813.1 competence type IV pilus ATPase ComGA Machinery gene
  FHP23_RS21360 (FHP23_021360) - 4150737..4151432 (+) 696 WP_000434125.1 helix-turn-helix domain-containing protein -
  FHP23_RS21365 (FHP23_021365) - 4151558..4151800 (+) 243 WP_000440721.1 DUF2626 domain-containing protein -
  FHP23_RS21370 (FHP23_021370) - 4151907..4153301 (+) 1395 WP_001094336.1 L-cystine transporter -
  FHP23_RS21375 (FHP23_021375) - 4153381..4153772 (-) 392 Protein_4180 hypothetical protein -
  FHP23_RS21380 (FHP23_021380) - 4153860..4154075 (-) 216 WP_001008326.1 DUF3912 family protein -
  FHP23_RS21385 (FHP23_021385) - 4154328..4154639 (+) 312 WP_001093237.1 hypothetical protein -
  FHP23_RS21390 (FHP23_021390) - 4154674..4155162 (-) 489 WP_139847816.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39153.53 Da        Isoelectric Point: 8.5415

>NTDB_id=618437 FHP23_RS21355 WP_098204813.1 4149488..4150531(-) (comGA) [Bacillus cereus strain A22]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYEAGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGYELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=618437 FHP23_RS21355 WP_098204813.1 4149488..4150531(-) (comGA) [Bacillus cereus strain A22]
ATGAATGGGATTGAAATTTTCGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCAGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTTGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTCGTGTTTACTGGACCAACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAGCAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGGGATGAGGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCGATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTGCTATATGGATATGAGTTAAAACAAGCACTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.196

100

0.562
  pilB Haemophilus influenzae 86-028NP

39.752

92.795

0.369