Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SCR2_RS07940 Genome accession   NC_022245
Coordinates   1590578..1592557 (-) Length   659 a.a.
NCBI ID   WP_020998025.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C818     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585578..1597557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCR2_RS07920 (SCR2_1558) amiF 1585783..1586706 (-) 924 WP_020998024.1 ATP-binding cassette domain-containing protein Regulator
  SCR2_RS07925 (SCR2_1559) amiE 1586717..1587784 (-) 1068 WP_006268109.1 ABC transporter ATP-binding protein Regulator
  SCR2_RS07930 (SCR2_1560) amiD 1587793..1588719 (-) 927 WP_006268005.1 oligopeptide ABC transporter permease OppC Regulator
  SCR2_RS07935 (SCR2_1561) amiC 1588719..1590215 (-) 1497 WP_006268182.1 ABC transporter permease Regulator
  SCR2_RS07940 (SCR2_1562) amiA3 1590578..1592557 (-) 1980 WP_020998025.1 peptide ABC transporter substrate-binding protein Regulator
  SCR2_RS07945 (SCR2_1563) amiA3 1592753..1594729 (-) 1977 WP_020998026.1 peptide ABC transporter substrate-binding protein Regulator
  SCR2_RS07950 (SCR2_1564) - 1594888..1595577 (-) 690 WP_020998027.1 B3/4 domain-containing protein -
  SCR2_RS07955 (SCR2_1565) - 1595800..1597413 (-) 1614 WP_020998028.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73306.97 Da        Isoelectric Point: 7.8912

>NTDB_id=61840 SCR2_RS07940 WP_020998025.1 1590578..1592557(-) (amiA3) [Streptococcus constellatus subsp. pharyngis C818]
MKKSKIIALAAVTLLTAGALTACSGSKTSSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSSVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSLLYNGPYLLKSITAKSSVELAKNPNYWDK
KNVHIDNIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVSYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDIIKPSSGESTKTYLGFDAGTNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=61840 SCR2_RS07940 WP_020998025.1 1590578..1592557(-) (amiA3) [Streptococcus constellatus subsp. pharyngis C818]
ATGAAGAAAAGTAAAATCATTGCTTTAGCGGCTGTTACCCTACTTACAGCAGGAGCCTTAACGGCTTGTTCTGGCTCTAA
AACAAGTTCTAGCAACAAAACATTTTCATATGTTTATGAGCAAGATCCAGATAATTTGGATTATTTGACAACTGGGAAGG
CTTCTACTTCAAATATTACAAGTAATGTCATTGATGGACTCTTAGAAAATGACCGTTACGGAAATTTAATCCCTTCTGTG
GCAAAGGATTGGACGGTTTCCAAAGATGGCTTGACTTACACTTATAAACTTCGTAAAGGTGTCAAATGGTATACATCCGA
AGGTGAAGAGTATGCCGAAGTCAAAGCGCAAGACTTTGTGACTGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCTA
TTTATTTGGTACAAGATTCAATCAAAGGCCTGGATGCTTACATGAAGGGTGAAAATAAAGATTTCTCTTCTGTCGGTATC
AAAGCGGTTGATGATTATACGGTTCAATATACTCTGAATCGACCAGAAAGCTTTTGGAATTCAAAGACTACGATGGGGGT
TTTAGCGCCAGTTAATGCAGAATTTTTGAAATCAAAAGGAAATAAATTTGCACAAGCAACAGACCCATCTAGTCTTCTTT
ATAATGGACCATACTTGCTAAAATCTATCACTGCAAAATCATCTGTTGAATTGGCTAAAAATCCAAACTATTGGGATAAG
AAAAATGTACACATTGATAACATCAAATTGTCTTACTATGATGGTCAAGACCAAGATAAACTTGCTAAAGGATTTAGTGA
CGGTTCATTTACCAATGCAAAAGTATTTCCAACTAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATCGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACATTTGCATTTGACCG
CACAGCTTATGCGTCACAAGTAAATGGGAAAGATGGTGCGACAAAGATGCTTCGTAATCTCTTTGTACCACCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTCAGCTACGATGAAAGTTGGAAAGATGTCAAC
TTAAATGATGCGCAAGACGGTCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCCAAAGCGAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCAATCCACATTGACATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAAAATCTTGGCAAAGAAAATGTTGTGATTGACATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCAGCTGCAGAAGATTGGGATCTTTCTGATAATGTTGGTTGGAGTCCAGACTTCCA
AGATCCATCTACCTATCTTGATATCATCAAACCTTCAAGCGGTGAAAGCACAAAGACTTATCTAGGATTTGATGCAGGTA
CGAATAACGCTGCAGCAGCACAAGTCGGTATGAACGAATATGAAAAGCTGTTGAACGAGGCTGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCGGCAGCCCAAGCTTGGTTGACTGATAATGCATTAGTTATTCCAACAACAACGCT
AACGGGTCGCCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.818

100

0.619
  amiA Streptococcus salivarius strain HSISS4

61.515

100

0.616
  amiA3 Streptococcus thermophilus LMG 18311

61.212

100

0.613

Multiple sequence alignment