Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NWO26_RS07165 Genome accession   NZ_CP102797
Coordinates   1394155..1395255 (+) Length   366 a.a.
NCBI ID   WP_024704278.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1389155..1400255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS07140 pgsA 1389695..1390237 (-) 543 WP_024704275.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NWO26_RS07145 - 1390250..1391107 (-) 858 WP_011681760.1 helix-turn-helix domain-containing protein -
  NWO26_RS07150 yfmH 1391166..1392443 (-) 1278 WP_024704276.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NWO26_RS07155 yfmF 1392445..1393695 (-) 1251 WP_024704277.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  NWO26_RS07160 yaaA 1393774..1394152 (+) 379 Protein_1412 S4 domain-containing protein YaaA -
  NWO26_RS07165 recF 1394155..1395255 (+) 1101 WP_024704278.1 DNA replication/repair protein RecF Machinery gene
  NWO26_RS07170 guaB 1395424..1396905 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  NWO26_RS07175 trpS 1397082..1398104 (-) 1023 WP_011681763.1 tryptophan--tRNA ligase -
  NWO26_RS07180 - 1398532..1399404 (+) 873 WP_011681764.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42172.35 Da        Isoelectric Point: 9.2442

>NTDB_id=618318 NWO26_RS07165 WP_024704278.1 1394155..1395255(+) (recF) [Streptococcus thermophilus strain ST057-1]
MWLKKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=618318 NWO26_RS07165 WP_024704278.1 1394155..1395255(+) (recF) [Streptococcus thermophilus strain ST057-1]
ATGTGGCTTAAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432