Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NWO26_RS00895 Genome accession   NZ_CP102797
Coordinates   166976..167572 (+) Length   198 a.a.
NCBI ID   WP_014608122.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 161976..172572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS00870 - 162112..162324 (+) 213 WP_011680924.1 alpha/beta fold hydrolase -
  NWO26_RS00875 - 162572..162763 (+) 192 WP_011227003.1 alpha/beta fold hydrolase -
  NWO26_RS00880 - 162936..163790 (+) 855 WP_024009803.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  NWO26_RS00885 - 163794..164630 (+) 837 WP_014608120.1 NAD(P)H-hydrate dehydratase -
  NWO26_RS00890 pbp2b 164752..166866 (+) 2115 WP_014621352.1 penicillin-binding protein PBP2B -
  NWO26_RS00895 recR 166976..167572 (+) 597 WP_014608122.1 recombination mediator RecR Machinery gene
  NWO26_RS00900 - 167713..168509 (+) 797 Protein_168 PRD domain-containing protein -
  NWO26_RS00905 ybeY 168729..169226 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  NWO26_RS00910 - 169207..169611 (+) 405 WP_011227008.1 diacylglycerol kinase family protein -
  NWO26_RS00915 era 169630..170529 (+) 900 WP_002950226.1 GTPase Era -
  NWO26_RS00920 mutM 170576..171397 (+) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  NWO26_RS00925 coaE 171394..171987 (+) 594 WP_113870401.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21802.00 Da        Isoelectric Point: 4.5326

>NTDB_id=618251 NWO26_RS00895 WP_014608122.1 166976..167572(+) (recR) [Streptococcus thermophilus strain ST057-1]
MLYPTPIAKLIDSFSKFPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=618251 NWO26_RS00895 WP_014608122.1 166976..167572(+) (recR) [Streptococcus thermophilus strain ST057-1]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAATTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47