Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT28_RS21285 Genome accession   NZ_CP085409
Coordinates   4156466..4158205 (-) Length   579 a.a.
NCBI ID   WP_242252181.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4151466..4163205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS21255 (LIT28_21270) - 4151603..4151836 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  LIT28_RS21260 (LIT28_21275) - 4151886..4152614 (-) 729 WP_242252178.1 glycerophosphodiester phosphodiesterase -
  LIT28_RS21265 (LIT28_21280) - 4152665..4152811 (+) 147 WP_001247671.1 YycC family protein -
  LIT28_RS21270 (LIT28_21285) - 4153051..4153611 (-) 561 Protein_4160 PRK06770 family protein -
  LIT28_RS21275 (LIT28_21290) spo0A 4153967..4154761 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  LIT28_RS21280 (LIT28_21295) spoIVB 4155049..4156347 (-) 1299 WP_242252179.1 SpoIVB peptidase -
  LIT28_RS21285 (LIT28_21300) recN 4156466..4158205 (-) 1740 WP_242252181.1 DNA repair protein RecN Machinery gene
  LIT28_RS21290 (LIT28_21305) argR 4158473..4158922 (-) 450 WP_001032581.1 arginine repressor ArgR -
  LIT28_RS21295 (LIT28_21310) - 4159065..4159904 (-) 840 WP_001274744.1 TlyA family RNA methyltransferase -
  LIT28_RS21300 (LIT28_21315) dxs 4159908..4161800 (-) 1893 WP_063223002.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIT28_RS21305 (LIT28_21320) ispA 4162103..4162993 (-) 891 WP_242252183.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65873.02 Da        Isoelectric Point: 4.8618

>NTDB_id=617877 LIT28_RS21285 WP_242252181.1 4156466..4158205(-) (recN) [Bacillus thuringiensis strain KF1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYRNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHRFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=617877 LIT28_RS21285 WP_242252181.1 4156466..4158205(-) (recN) [Bacillus thuringiensis strain KF1]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGAGCCGGGAAATCGATTATTATCGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCGGCGGAAT
TTGTTCGATATGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATTGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAACTGGTTACTCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCATG
AAACGCAAGATTTAATGAATGAAGAGCGTCATCTATTTATGCTCGATCATTTTGATGGAGAACGTATCGTTAAACAATTG
GATATATATCGAAACGTATACGCTGATTATGAGAAGTTGAAAAAACAGTTAAAATCATTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGCGATGCATATCGTTCGTTAAGCGCT
GATGGACAAGGATTAGACAATGTGCGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAATGTATCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATACATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGAGCGCCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAAGTCGCTTCTGGCGGAGAGCTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGTCGGGTCGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACGTCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCGGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCGTTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599