Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LIT28_RS21275 Genome accession   NZ_CP085409
Coordinates   4153967..4154761 (-) Length   264 a.a.
NCBI ID   WP_033686380.1    Uniprot ID   A0A4Y6EYG5
Organism   Bacillus thuringiensis strain KF1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4148967..4159761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS21250 (LIT28_21265) - 4149394..4151466 (-) 2073 WP_242252177.1 sigma-54-dependent Fis family transcriptional regulator -
  LIT28_RS21255 (LIT28_21270) - 4151603..4151836 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  LIT28_RS21260 (LIT28_21275) - 4151886..4152614 (-) 729 WP_242252178.1 glycerophosphodiester phosphodiesterase -
  LIT28_RS21265 (LIT28_21280) - 4152665..4152811 (+) 147 WP_001247671.1 YycC family protein -
  LIT28_RS21270 (LIT28_21285) - 4153051..4153611 (-) 561 Protein_4160 PRK06770 family protein -
  LIT28_RS21275 (LIT28_21290) spo0A 4153967..4154761 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  LIT28_RS21280 (LIT28_21295) spoIVB 4155049..4156347 (-) 1299 WP_242252179.1 SpoIVB peptidase -
  LIT28_RS21285 (LIT28_21300) recN 4156466..4158205 (-) 1740 WP_242252181.1 DNA repair protein RecN Machinery gene
  LIT28_RS21290 (LIT28_21305) argR 4158473..4158922 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4718

>NTDB_id=617876 LIT28_RS21275 WP_033686380.1 4153967..4154761(-) (spo0A) [Bacillus thuringiensis strain KF1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=617876 LIT28_RS21275 WP_033686380.1 4153967..4154761(-) (spo0A) [Bacillus thuringiensis strain KF1]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATAGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTTG
TTTTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATCGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGATTTAGGTGCTTCCTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTAAGCGGTAAGGCAAACGCTACTATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGAAAGCCGAAAAACTTAGATGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGATATATGTACTTAAGGGAAGCAATCTCTATGGTGTATAACGATATAGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAAAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGTTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6EYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818