Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIT28_RS05870 Genome accession   NZ_CP085409
Coordinates   1148484..1150310 (+) Length   608 a.a.
NCBI ID   WP_063224606.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143484..1155310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS05850 (LIT28_05850) - 1143791..1144465 (-) 675 WP_242250971.1 TerC family protein -
  LIT28_RS05855 (LIT28_05855) mecA 1144808..1145491 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  LIT28_RS05860 (LIT28_05860) - 1145564..1147108 (+) 1545 WP_063224608.1 cardiolipin synthase -
  LIT28_RS05865 (LIT28_05865) - 1147188..1148432 (+) 1245 WP_242250972.1 competence protein CoiA family protein -
  LIT28_RS05870 (LIT28_05870) pepF 1148484..1150310 (+) 1827 WP_063224606.1 oligoendopeptidase F Regulator
  LIT28_RS05875 (LIT28_05875) - 1150438..1150611 (-) 174 WP_080468697.1 hypothetical protein -
  LIT28_RS05880 (LIT28_05880) - 1150841..1151734 (-) 894 WP_242250973.1 ClpXP adapter SpxH family protein -
  LIT28_RS05885 (LIT28_05885) - 1151734..1152132 (-) 399 WP_000043381.1 hypothetical protein -
  LIT28_RS05890 (LIT28_05890) - 1152312..1152890 (-) 579 WP_063224604.1 CYTH domain-containing protein -
  LIT28_RS05895 (LIT28_05895) - 1153035..1153406 (+) 372 WP_001180003.1 hypothetical protein -
  LIT28_RS05900 (LIT28_05900) - 1153437..1154075 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  LIT28_RS05905 (LIT28_05905) - 1154094..1154891 (+) 798 WP_000673195.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70209.49 Da        Isoelectric Point: 4.6403

>NTDB_id=617863 LIT28_RS05870 WP_063224606.1 1148484..1150310(+) (pepF) [Bacillus thuringiensis strain KF1]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKDLLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSIYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYGLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=617863 LIT28_RS05870 WP_063224606.1 1148484..1150310(+) (pepF) [Bacillus thuringiensis strain KF1]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGCAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACGGATGCAGAATGGGAAAAAGAATTTCAAGCTATTAAAGATTTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGATCGCGCGACAAATTTATA
TTCACAAGTATCCAGTAGTACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTATATATGAACATGCATTAGAAGAAATTACGCGTCAACGCCCGCACGTATTATCTGAAGCA
GAAGAGGCTCTATTAGCAGAAGCATCTGAAGTAATGAGTGCATCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTACGCGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCGGTGAAGCGTAATAATTTCAATGCGCGCGTTCGCAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCCGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTAAACGTCCTTGGTGATGAGTATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAGCGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACGCTTGCTCATGAGTTTGGTCATTCC
GTGCATAGTTACTATACAAGAAAAACGCAGCCGCACGTATACGGTGATTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGTTACTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGGCATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGGTTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTATAATTATTACGTATACCAATACGCAACAG
GATTTAGTGCTGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCGGATTATCCAATTGAAGTGCTGAAAAAGGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCACTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488