Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIS81_RS20575 Genome accession   NZ_CP085399
Coordinates   4020301..4022040 (-) Length   579 a.a.
NCBI ID   WP_000947747.1    Uniprot ID   -
Organism   Bacillus tropicus strain CK18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4015301..4027040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS20560 (LIS81_20575) - 4015983..4017506 (-) 1524 WP_252210755.1 glycosyltransferase family 39 protein -
  LIS81_RS20565 (LIS81_20580) spo0A 4017802..4018596 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  LIS81_RS20570 (LIS81_20585) spoIVB 4018884..4020182 (-) 1299 WP_226640705.1 SpoIVB peptidase -
  LIS81_RS20575 (LIS81_20590) recN 4020301..4022040 (-) 1740 WP_000947747.1 DNA repair protein RecN Machinery gene
  LIS81_RS20580 (LIS81_20595) argR 4022308..4022757 (-) 450 WP_001032581.1 arginine repressor ArgR -
  LIS81_RS20585 (LIS81_20600) - 4022900..4023739 (-) 840 WP_033692566.1 TlyA family RNA methyltransferase -
  LIS81_RS20590 (LIS81_20605) dxs 4023743..4025635 (-) 1893 WP_252210756.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIS81_RS20595 (LIS81_20610) ispA 4025938..4026828 (-) 891 WP_000150359.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65755.85 Da        Isoelectric Point: 4.7915

>NTDB_id=617731 LIS81_RS20575 WP_000947747.1 4020301..4022040(-) (recN) [Bacillus tropicus strain CK18]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDLVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=617731 LIS81_RS20575 WP_000947747.1 4020301..4022040(-) (recN) [Bacillus tropicus strain CK18]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAAATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCTGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTTGATCACTTTGATGGAGATCGTATCGTGAAACAATTG
GATATATACCAAAACGTATACGCTGACTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATCCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGGGATGCATATCGCTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTATATCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTACCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAGATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCACCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCGGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACGGCGGATGGTTACGATCTTGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAAGTGGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCATCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACATCCGTTACGG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCGGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.276

100

0.603