Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LIS81_RS20565 Genome accession   NZ_CP085399
Coordinates   4017802..4018596 (-) Length   264 a.a.
NCBI ID   WP_033686380.1    Uniprot ID   A0A4Y6EYG5
Organism   Bacillus tropicus strain CK18     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4012802..4023596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS20555 (LIS81_20570) - 4014196..4015614 (-) 1419 WP_226640707.1 hypothetical protein -
  LIS81_RS20560 (LIS81_20575) - 4015983..4017506 (-) 1524 WP_252210755.1 glycosyltransferase family 39 protein -
  LIS81_RS20565 (LIS81_20580) spo0A 4017802..4018596 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  LIS81_RS20570 (LIS81_20585) spoIVB 4018884..4020182 (-) 1299 WP_226640705.1 SpoIVB peptidase -
  LIS81_RS20575 (LIS81_20590) recN 4020301..4022040 (-) 1740 WP_000947747.1 DNA repair protein RecN Machinery gene
  LIS81_RS20580 (LIS81_20595) argR 4022308..4022757 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4718

>NTDB_id=617730 LIS81_RS20565 WP_033686380.1 4017802..4018596(-) (spo0A) [Bacillus tropicus strain CK18]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=617730 LIS81_RS20565 WP_033686380.1 4017802..4018596(-) (spo0A) [Bacillus tropicus strain CK18]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTTG
TTTTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGTCAAGAAGATGTGACGAAAAAAGCGGTTGACTTAGGTGCTTCCTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCAAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGAAAGCCGAAAAATTTAGATGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGATATATGTATTTAAGAGAAGCAATCTCTATGGTGTACAACGATATCGAATTACT
TGGATCTATTACAAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTTGAGCGTGCAATCC
GTCACGCGATTGAAGTAGCATGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAGCATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6EYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818