Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIS81_RS06120 Genome accession   NZ_CP085399
Coordinates   1188836..1190662 (+) Length   608 a.a.
NCBI ID   WP_252211001.1    Uniprot ID   -
Organism   Bacillus tropicus strain CK18     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183836..1195662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS06100 (LIS81_06105) - 1184145..1184819 (-) 675 WP_000362614.1 TerC family protein -
  LIS81_RS06105 (LIS81_06110) mecA 1185160..1185843 (+) 684 WP_000350710.1 adaptor protein MecA Regulator
  LIS81_RS06110 (LIS81_06115) - 1185916..1187460 (+) 1545 WP_000799204.1 cardiolipin synthase -
  LIS81_RS06115 (LIS81_06120) - 1187541..1188785 (+) 1245 WP_226639999.1 competence protein CoiA family protein -
  LIS81_RS06120 (LIS81_06125) pepF 1188836..1190662 (+) 1827 WP_252211001.1 oligoendopeptidase F Regulator
  LIS81_RS06125 (LIS81_06130) - 1190782..1190955 (-) 174 WP_002051510.1 hypothetical protein -
  LIS81_RS06130 (LIS81_06135) - 1191185..1192078 (-) 894 WP_252211004.1 ClpXP adapter SpxH family protein -
  LIS81_RS06135 (LIS81_06140) - 1192078..1192476 (-) 399 WP_000043380.1 hypothetical protein -
  LIS81_RS06140 (LIS81_06145) - 1192655..1193233 (-) 579 WP_000191127.1 CYTH domain-containing protein -
  LIS81_RS06145 (LIS81_06150) - 1193378..1193749 (+) 372 WP_001180001.1 hypothetical protein -
  LIS81_RS06150 (LIS81_06155) - 1193780..1194418 (+) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  LIS81_RS06155 (LIS81_06160) - 1194437..1195234 (+) 798 WP_000673185.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70262.51 Da        Isoelectric Point: 4.6440

>NTDB_id=617719 LIS81_RS06120 WP_252211001.1 1188836..1190662(+) (pepF) [Bacillus tropicus strain CK18]
MSEQNTAKALPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEDVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=617719 LIS81_RS06120 WP_252211001.1 1188836..1190662(+) (pepF) [Bacillus tropicus strain CK18]
ATGTCTGAACAAAATACAGCAAAAGCATTACCAGATCGTAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTTTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTTCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGACGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAATTTCAATGCGCGCGTTCGTAAATATGACTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATCCCTGAAGCGGTGTACGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCGCTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGGGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATATGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGTTGCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATAATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACACCAGACATGTTAACGGAAATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCGGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCTTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.533

0.49